Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4739 105 5e-18 >seq4739 Length=56954 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||||| ||| |||||||||||||||||| |||| | || | || | || || Sbjct 21115 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT-TCGGCCATCCTC 21057 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || || | ||||| ||||| | || | ||| ||||| || Sbjct 21056 AAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTG 20997 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | || || |||| |||||| || |||| || || ||||| Sbjct 20996 GATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTT 20937 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | |||||| |||||||| ||||| Sbjct 20936 TCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || |||||||||||||| |||||||| ||| || || | || || Sbjct 21344 CACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTC 21285 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| || || || ||||| ||||| || |||| || | ||| ||||| ||| Sbjct 21284 CAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 21225 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || ||||| | |||||| ||||| Sbjct 21224 GATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTT 21165 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| || ||||| ||||| Sbjct 21164 GCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 100 bits (110), Expect = 2e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | |||| ||| || ||| ||||||||||||||||| || Sbjct 20909 CATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTC 20850 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || |||| || || || || || || ||||| | ||| || || || | Sbjct 20849 CGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGG 20790 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285 || | ||| ||||| ||| |||||| ||| || ||| | |||||||||| |||| Sbjct 20789 TGGAATACCCTCCTTATCCTGAATCTTCGACTT-AACGTTGTCAATGGTGTCGGATGATT 20731 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||||| | ||||| ||||| || || | ||||| |||| Sbjct 20730 CGACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| || ||||||||||||| || || |||| || Sbjct 20604 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCG 20545 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| || || || |||| ||| | |||||||| ||| Sbjct 20544 AGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 20485 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || || || || | ||||| ||||| Sbjct 20484 ATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTA 20425 Query 44309 CCCGT 44313 || || Sbjct 20424 CCAGT 20420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359969564318133