Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 105 5e-18
>seq4739
Length=56954
Score = 105 bits (116), Expect = 5e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|||| ||||| ||| |||||||||||||||||| |||| | || | || | || ||
Sbjct 21115 ACCAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGT-TCGGCCATCCTC 21057
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| || || || || | ||||| ||||| | || | ||| ||||| ||
Sbjct 21056 AAGTTGCTTGCCTGCGAAAATGAGTCGCTGTTGATCAGGTGGGATACCCTCCTTGTCTTG 20997
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | || || |||| |||||| || |||| || || |||||
Sbjct 20996 GATCTTGGACTTCACATTGTCGATAGTATCGGAGGATTCAACTTCCAAAGTGATTGTCTT 20937
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || | |||||| |||||||| |||||
Sbjct 20936 TCCAGTCAAGGTCTTAACGAAGATCTGCAT 20907
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| || |||||||||||||| |||||||| ||| || || | || ||
Sbjct 21344 CACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTAAGGGTACGACCATCCTC 21285
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| || || || ||||| ||||| || |||| || | ||| ||||| |||
Sbjct 21284 CAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 21225
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | || ||||| | || || ||||| | |||||| |||||
Sbjct 21224 GATCTTGGACTTGACATTATCAATTGTGTCCGAAGACTCAACCTCTAACGTAATTGTCTT 21165
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | ||||| || ||||| |||||
Sbjct 21164 GCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135
Score = 100 bits (110), Expect = 2e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | ||||| | |||| ||| || ||| ||||||||||||||||| ||
Sbjct 20909 CATACCACCACGGAGTCTGAGAACCAAGTGGAGTGTGGATTCCTTTTGGATGTTGTAGTC 20850
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| ||| || |||| || || || || || || ||||| | ||| || || || |
Sbjct 20849 CGAGAGAGTTCGTCCGTCCTCAAGTTGTTTACCAGCGAAGATAAGACGTTGTTGGTCCGG 20790
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATT 44285
|| | ||| ||||| ||| |||||| ||| || ||| | |||||||||| ||||
Sbjct 20789 TGGAATACCCTCCTTATCCTGAATCTTCGACTT-AACGTTGTCAATGGTGTCGGATGATT 20731
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327
| ||||| | ||||| ||||| || || | ||||| ||||
Sbjct 20730 CGACCTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTGACGA 20689
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||| || || |||||| || ||||||||||||| || || |||| ||
Sbjct 20604 ACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAAAGGGTACGACCGTCCTCG 20545
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| ||||| |||||||| || || || |||| ||| | |||||||| |||
Sbjct 20544 AGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 20485
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | ||||| || | || || || || | ||||| |||||
Sbjct 20484 ATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCTACTTCGAGAGTAATAGTCTTA 20425
Query 44309 CCCGT 44313
|| ||
Sbjct 20424 CCAGT 20420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359969564318133
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |