Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10-
27] 4,749 sequences; 51,524,987 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq4739 143 6e-29
seq1669 114 3e-20
seq4373 113 1e-19
>seq4739
Length=56954
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || ||| | || || || || || || |||||||| ||| || |||||||| |
Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| ||||| || ||||||||||| || || || || || |||||||| ||||| ||||
Sbjct 20749 ACAACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTA 20808
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
||||||| || ||||| || || || ||| | ||||| | || || ||| ||||||| |
Sbjct 20809 TCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGG 20868
Query 178111 AATCAACACTGCATCTTGTTTTGAGACTC 178139
|||| ||||| || | ||| | ||||||
Sbjct 20869 AATCCACACTCCACTTGGTTCTCAGACTC 20897
Score = 116 bits (128), Expect = 9e-21
Identities = 137/184 (74%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || || || ||||| || || || || |||||||| ||||||||
Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| ||||| || ||||| ||||| ||||| | ||||||||||| ||
Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | || ||| ||||||| ||| | || || || || || || ||
Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCA- 20598
Query 178125 CTTG 178128
||||
Sbjct 20599 CTTG 20602
>seq1669
Length=79912
Score = 114 bits (126), Expect = 3e-20
Identities = 104/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
|| ||||| ||||| || ||||| ||||| |||||||| || |||||||| ||||||
Sbjct 7574 TCGGACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAC 7515
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
|| ||||| || ||||||||||||||||| |||||||| || | || || ||| ||
Sbjct 7514 CAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACCCTCAGCGACTAC 7455
Query 178098 AACGTCCAAAA 178108
||| |||||||
Sbjct 7454 AACATCCAAAA 7444
>seq4373
Length=63444
Score = 113 bits (124), Expect = 1e-19
Identities = 116/152 (76%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037
|| ||||| ||||| || |||||| ||||| |||||||| || |||||||| || |||
Sbjct 31601 TCTGACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCACCAGAC 31542
Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097
|| || || | |||||||||||||| || |||||||| || | || || ||| ||
Sbjct 31541 CAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTAC 31482
Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
||| ||||||| || || || || ||||| ||
Sbjct 31481 AACATCCAAAAGGAGTCGACCCTCCATCTCGT 31450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203657957094306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |