Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4739 143 6e-29 seq1669 114 3e-20 seq4373 113 1e-19 >seq4739 Length=56954 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||| | || || || || || || |||||||| ||| || |||||||| | Sbjct 20689 TCGTCAAGACTTTGACTGGCAAGACCATTACTCTCGAGGTCGAATCATCCGACACCATTG 20748 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | ||||| || ||||||||||| || || || || || |||||||| ||||| |||| Sbjct 20749 ACAACGTTAAGTCGAAGATTCAGGATAAGGAGGGTATTCCACCGGACCAACAACGTCTTA 20808 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 ||||||| || ||||| || || || ||| | ||||| | || || ||| ||||||| | Sbjct 20809 TCTTCGCTGGTAAACAACTTGAGGACGGACGAACTCTCTCGGACTACAACATCCAAAAGG 20868 Query 178111 AATCAACACTGCATCTTGTTTTGAGACTC 178139 |||| ||||| || | ||| | |||||| Sbjct 20869 AATCCACACTCCACTTGGTTCTCAGACTC 20897 Score = 116 bits (128), Expect = 9e-21 Identities = 137/184 (74%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || || || ||||| || || || || |||||||| |||||||| Sbjct 20420 ACTGGTAAGACTATTACTCTCGAAGTAGAGTCTTCTGATACCATCGACAACGTCAAGTCC 20479 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| ||||| || ||||| ||||| ||||| | ||||||||||| || Sbjct 20480 AAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAACAACGCTTGATCTTCGCCGGCAAG 20539 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | || ||| ||||||| ||| | || || || || || || || Sbjct 20540 CAGCTCGAGGACGGTCGTACCCTTTCCGATTACAACATTCAGAAGGAGTCTACTCTCCA- 20598 Query 178125 CTTG 178128 |||| Sbjct 20599 CTTG 20602 >seq1669 Length=79912 Score = 114 bits (126), Expect = 3e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||| ||||| || ||||| ||||| |||||||| || |||||||| |||||| Sbjct 7574 TCGGACACAATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAC 7515 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || ||||| || ||||||||||||||||| |||||||| || | || || ||| || Sbjct 7514 CAACAACGTCTAATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACCCTCAGCGACTAC 7455 Query 178098 AACGTCCAAAA 178108 ||| ||||||| Sbjct 7454 AACATCCAAAA 7444 >seq4373 Length=63444 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || ||||| ||||| || |||||| ||||| |||||||| || |||||||| || ||| Sbjct 31601 TCTGACACAATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATCCCACCAGAC 31542 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 || || || | |||||||||||||| || |||||||| || | || || ||| || Sbjct 31541 CAACAGCGCTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGTACCCTCAGCGACTAC 31482 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||||| || || || || ||||| || Sbjct 31481 AACATCCAAAAGGAGTCGACCCTCCATCTCGT 31450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203657957094306