Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fraxineus_20[genbank_20GCA_5F001414365.1_202015-10- 27] 4,749 sequences; 51,524,987 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4739 116 3e-21 seq4373 105 6e-18 >seq4739 Length=56954 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | ||||| ||||| ||||||||||| |||||||| |||||| Sbjct 21361 CCTCCACGTAGACGAAGCACCAAGTGCAGGGTGCTCTCCTTTTGAATGTTGTAGTCGCTA 21302 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || | ||||| || ||||| |||| ||||||||||| | ||| Sbjct 21301 AGGGTACGACCATCCTCCAATTGCTTACCAGCGAAAATCAATCGCTGTTGGTCTGGTGGA 21242 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| || ||| | | | | | ||||| ||||| || Sbjct 21241 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTATCA-ATTGTGTCCGAAGACTCAAC 21183 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || |||| ||||| || || |||||||| Sbjct 21182 CTCTAACGTAATTGTCTTGCCTGTCAAAGTCTTGACAAAGATCTGCAT 21135 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||||||||| || ||||| Sbjct 20622 CCACCACGAAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCGGAA 20563 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| |||||||||||||||||||| |||| ||| |||||||| | ||| Sbjct 20562 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGTTGTTGGTCTGGAGGA 20503 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | || ||||||||| ||| || Sbjct 20502 ATGCCTTCCTTGTCCTGGATCTT 20480 >seq4373 Length=63444 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| ||||| || || |||||| || ||||| |||||| | Sbjct 31432 CCTCCACGGAGACGGAGCACGAGATGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGCTG 31491 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||| ||||| |||||||| |||| |||||||||||| | || Sbjct 31492 AGGGTACGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAAGCGCTGTTGGTCTGGTGGG 31551 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 31552 ATTCCCTCCTTGTCCTGGATCTT 31574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462276556478800