Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq476 105 1e-17 seq101 95.1 3e-14 seq104 84.2 5e-11 >seq476 Length=308794 Score = 105 bits (116), Expect = 1e-17 Identities = 176/252 (70%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446 |||| || || || ||||| | || | |||||| | || ||| |||| ||| | Sbjct 12321 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTC 12262 Query 230447 TTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || | ||||||||||| ||||| ||| || ||||| || ||||| ||||| || | Sbjct 12261 TTCTGGGCATGAACGCC-AACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTC 12203 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || | || || | ||||| || ||||| | ||||| || | ||||||||| Sbjct 12202 CTCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAG 12143 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| || ||| ||| ||||| ||||||||||| |||||||| ||| || || | | Sbjct 12142 AACATCTCTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAG 12083 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 12082 GCTGGTGTCATG 12071 >seq101 Length=641113 Score = 95.1 bits (104), Expect = 3e-14 Identities = 204/304 (67%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 319364 CGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTC 319423 ||| ||||| |||||||||| || ||||| | ||| || || || | || || | Sbjct 9767 CGGAAAGGGTGTAGTAACTCTTTGCCTCGGGCTTTTGCTTGACAAATTCAGCCAAGTTAC 9708 Query 319424 CCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGT 319483 ||||||| ||| ||||| ||| ||||||||| |||| ||||| ||| || Sbjct 9707 CCTTGTATGACTTGAGCTTCTTTCCAGGCTCGTAATGGTAAATATCAGTGCAGACATTGT 9648 Query 319484 CGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATC---A 319540 ||||||| ||||||||| ||||| |||| | | || ||| | ||| | | | Sbjct 9647 CGAGGAAGGTGGAGTCGTGGGACACGATCAAACTGGTAATGTC---AGGGTGGGTTTGGA 9591 Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600 ||||| |||||| | | ||| | ||| | ||| ||||| || |||||||||| Sbjct 9590 GGTATGTTTCCAACCATTTGATGTTGGCGACATCCAAATGATTGGTAGGTTCGTCAAGAA 9531 Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660 | | | | || |||| | ||| ||||| || | ||| | ||||| ||||| || | Sbjct 9530 GTAAGACATCGGCCTTCATCAACATAGCACGAGCCAAAGCCAACTTCATCTTCCAACCAC 9471 Query 319661 CGGA 319664 | || Sbjct 9470 CAGA 9467 >seq104 Length=83277 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 305186 CTTCCGTTCGACTCACCGGAAGCCAGGGACCTCAACCGCGAAATCTTCGAACATATCTAC 305245 ||||| ||||| || || ||||||| | |||| ||| | ||||||||||| || ||| Sbjct 47449 CTTCCTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTAC 47390 Query 305246 TACGCCGCCGTAGAAGCGTCGGTAGAACTTGCAGAAATTCATGGACCCCATCCCACATTC 305305 |||| || | || || || || | ||| |||||||||| || || |||| | Sbjct 47389 CACGCTGCTTTGACTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGACATAC 47330 Query 305306 GAAGGTTCTCCCGCGAGCAAAGGTATCCTCCAGTATCACATGTGGGATGTTACCCC 305361 |||| || || || ||| || ||||| ||| ||||||||| |||||| || Sbjct 47329 CAAGGCTCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGGGTGTTACACC 47274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817169101520