Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq476 105 1e-17
seq101 95.1 3e-14
seq104 84.2 5e-11
>seq476
Length=308794
Score = 105 bits (116), Expect = 1e-17
Identities = 176/252 (70%), Gaps = 2/252 (1%)
Strand=Plus/Minus
Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446
|||| || || || ||||| | || | |||||| | || ||| |||| ||| |
Sbjct 12321 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTC 12262
Query 230447 TTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505
|| | ||||||||||| ||||| ||| || ||||| || ||||| ||||| || |
Sbjct 12261 TTCTGGGCATGAACGCC-AACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTC 12203
Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565
| || | || || | ||||| || ||||| | ||||| || | |||||||||
Sbjct 12202 CTCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAG 12143
Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625
||| || ||| ||| ||||| ||||||||||| |||||||| ||| || || | |
Sbjct 12142 AACATCTCTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAG 12083
Query 230626 CCTGGTGTGATG 230637
||||||| |||
Sbjct 12082 GCTGGTGTCATG 12071
>seq101
Length=641113
Score = 95.1 bits (104), Expect = 3e-14
Identities = 204/304 (67%), Gaps = 6/304 (2%)
Strand=Plus/Minus
Query 319364 CGGTAAGGGCGTAGTAACTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTC 319423
||| ||||| |||||||||| || ||||| | ||| || || || | || || |
Sbjct 9767 CGGAAAGGGTGTAGTAACTCTTTGCCTCGGGCTTTTGCTTGACAAATTCAGCCAAGTTAC 9708
Query 319424 CCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGT 319483
||||||| ||| ||||| ||| ||||||||| |||| ||||| ||| ||
Sbjct 9707 CCTTGTATGACTTGAGCTTCTTTCCAGGCTCGTAATGGTAAATATCAGTGCAGACATTGT 9648
Query 319484 CGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATC---A 319540
||||||| ||||||||| ||||| |||| | | || ||| | ||| | | |
Sbjct 9647 CGAGGAAGGTGGAGTCGTGGGACACGATCAAACTGGTAATGTC---AGGGTGGGTTTGGA 9591
Query 319541 GGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAA 319600
||||| |||||| | | ||| | ||| | ||| ||||| || ||||||||||
Sbjct 9590 GGTATGTTTCCAACCATTTGATGTTGGCGACATCCAAATGATTGGTAGGTTCGTCAAGAA 9531
Query 319601 GCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTC 319660
| | | | || |||| | ||| ||||| || | ||| | ||||| ||||| || |
Sbjct 9530 GTAAGACATCGGCCTTCATCAACATAGCACGAGCCAAAGCCAACTTCATCTTCCAACCAC 9471
Query 319661 CGGA 319664
| ||
Sbjct 9470 CAGA 9467
>seq104
Length=83277
Score = 84.2 bits (92), Expect = 5e-11
Identities = 124/176 (70%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 305186 CTTCCGTTCGACTCACCGGAAGCCAGGGACCTCAACCGCGAAATCTTCGAACATATCTAC 305245
||||| ||||| || || ||||||| | |||| ||| | ||||||||||| || |||
Sbjct 47449 CTTCCTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTAC 47390
Query 305246 TACGCCGCCGTAGAAGCGTCGGTAGAACTTGCAGAAATTCATGGACCCCATCCCACATTC 305305
|||| || | || || || || | ||| |||||||||| || || |||| |
Sbjct 47389 CACGCTGCTTTGACTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGACATAC 47330
Query 305306 GAAGGTTCTCCCGCGAGCAAAGGTATCCTCCAGTATCACATGTGGGATGTTACCCC 305361
|||| || || || ||| || ||||| ||| ||||||||| |||||| ||
Sbjct 47329 CAAGGCTCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGGGTGTTACACC 47274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057817169101520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |