Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq104 255 7e-63 seq476 122 1e-22 >seq104 Length=83277 Score = 255 bits (282), Expect = 7e-63 Identities = 1317/2066 (64%), Gaps = 51/2066 (2%) Strand=Plus/Plus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCTGCTAT 52926 || || |||| || ||||||||||| || | || || | || || | || Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864 Query 52927 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 53046 ||| || ||||| || ||||||| || || |||| ||| ||||| |||||| Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984 Query 53047 GTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 |||| | || || || |||||||| || | || || | ||||| || | ||| Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | | | || | | | |||| || || || || || || || ||||| Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 || | || | |||| || || || |||||| || || | |||| || || Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | ||| ||| || ||||| |||||||| || || | ||||| || | | || Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224 Query 53284 GTATGTTCTG-ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACN 53341 || ||| | | | | | || || | |||||| ||||||||| | ||| ||| Sbjct 47225 GT--GTTGAGCAATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGTAGGTGTAACA 47282 Query 53342 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 53401 ||| || || || ||| || ||| ||||| || ||| Sbjct 47283 CCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATAT 47342 Query 53402 GGTCCTTCCTTCTCAGCTAGTTC-AC--AACTCGCCTCTAATGCACCGTAATAAATGGTT 53458 || || | | | || | || || || | | || ||| ||| ||||||||| Sbjct 47343 GGACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTT 47399 Query 53459 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 |||||||| | | || || | |||| ||||| | || || ||| | ||||| Sbjct 47400 TCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAG 47457 Query 53518 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 | || || || || | ||||||||||| | | | |||||||| || | ||| | Sbjct 47458 CCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-G 47516 Query 53577 AGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 |||| || || |||| || ||||| || | ||| ||||| ||||| | ||| || Sbjct 47517 CTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTG 47576 Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATCTATTA--CA 53692 || | ||||| | || || | || || | || ||| || || | ||| | || Sbjct 47577 ACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCA 47636 Query 53693 A-ACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 | | ||||| | |||| ||||||| ||| ||||| || ||||||| | | | || Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACA 47695 Query 53750 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || | | ||||||||||| | || | |||||| || | ||| | ||| || Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||||||| ||| || |||||||| ||||| ||||| || | || || ||| |||| | Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTC 53925 || | || | | ||| | | || || || | ||| | ||| ||| Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCTTC 47872 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 |||||| |||||| || |||||||| || | || | | |||||||||| Sbjct 47873 AGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGG 47932 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 ||| || | || |||||||| | ||| || || | | || || ||||| ||||| Sbjct 47933 ACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAG 47992 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 ||| || ||||| ||||| || ||||| | || | | ||||| ||||| || Sbjct 47993 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 48052 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 |||| ||||| |||||| | | || ||| | ||||| || || | ||| |||| | Sbjct 48053 CTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAA 48112 Query 54166 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 54225 | | ||||| || ||||| || || ||||| | |||||||||||||| || |||||| Sbjct 48113 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCG 48172 Query 54226 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 54285 | ||| |||| ||| || ||||| || || || || | ||||| || | || Sbjct 48173 AAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGC 48232 Query 54286 ACGAATATTACTA--ATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCAT 54343 ||| || | | |||| ||||| || || || || | || || || | || || Sbjct 48233 ACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAA 48290 Query 54344 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 54403 ||| || || || ||||| || || || || || ||| |||||| | || || ||| Sbjct 48291 ATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 48350 Query 54404 CTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | || ||| | | || || || || | || || || ||||| || || Sbjct 48351 GATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAA 48409 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 |||| || | | ||||| |||||||| || | || |||||| || || Sbjct 48410 GTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGAT 48469 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 ||| || || || ||||| | ||| || || || | |||| ||||||| | | Sbjct 48470 TCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGCG 48529 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 54640 || | || ||| || | || || ||||| || || | ||| ||||| || || Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGG 48587 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATGGTAAT 54699 ||||| | |||| | |||||||| | ||| || || |||| ||| ||| | | Sbjct 48588 TCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT--T 48645 Query 54700 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCT 54758 ||| || || || || | || ||| |||| |||||||||| |||| || Sbjct 48646 GTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTCGG 48705 Query 54759 TCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 || || | | | ||| | || || |||| ||||| ||||| || || || ||||| Sbjct 48706 AGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTCTT 48764 Query 54818 GCGGCTAGAATGGCATAATCCGGATG 54843 || || || ||||||||||| || || Sbjct 48765 GCTGCGAGGATGGCATAATCGGGGTG 48790 >seq476 Length=308794 Score = 122 bits (134), Expect = 1e-22 Identities = 338/515 (66%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 |||||||| ||| | ||||| || ||||| || ||||| || ||| | | || || || Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| || ||| |||| |||| ||| || || | ||| | | | || | ||||| Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAAC-CTTCTCATTGCCGAG--AGAAAGG 12200 Query 23964 AAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATA 24020 | | ||| ||||| ||||| || ||| ||||||| | ||||| || | | Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080 || | ||||||||| | || | || ||||| ||||| || || || || || Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320 Query 24081 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140 | | |||| | | | || || ||| | || || || | | |||||| Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380 Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200 || ||| ||| |||||||| || | || || |||||||| || || || || | | Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440 Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260 || ||||||||||| || | ||| || ||||| || || || ||| ||||| || || Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500 Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCAC 24317 || || || |||||||||| ||| | || || | | | |||| || ||||| Sbjct 12501 TCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGATTCCTTGTCTTGGATCCAT 12560 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 |||||||||||| ||||| || | ||||| Sbjct 12561 CGGACAGCCCAATCGGCTTTCTTCTTGATGCAAGG 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717859553920