Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 1e-14 >seq18 Length=186891 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||| |||| || | ||| ||||| || |||||||| ||||||| Sbjct 167222 TTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCG 167163 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || ||||||| || || || || ||| | || || | || |||||| | Sbjct 167162 AAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 167103 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| |||||| || || | | ||| ||||| | | || Sbjct 167102 GGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGA 167043 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGAC 21163 || | ||| || ||||||||||| || || ||||| Sbjct 167042 CCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGAC 167006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | |||||||||||||| || || ||||| | || |||| || | ||| Sbjct 167433 AGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCC 167374 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| || ||||| || |||| |||| ||| ||||| || | || ||||| || Sbjct 167373 TCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC 167314 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| |||||| | || |||| ||| |||||| Sbjct 167313 TGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTC 167254 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || | || ||||| || ||||||||| Sbjct 167253 TTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || || | ||||||| |||| |||| ||||||||||||||| || || Sbjct 167677 TCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCT 167618 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || | ||||||| || ||||| || |||| | || ||| ||||| || Sbjct 167617 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGG 167558 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || ||||| || ||||||| || || | | | || || | ||| Sbjct 167557 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 167498 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| |||||||| || || || ||||||||||||||||| Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422256606272864