Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq476 141 1e-28
seq18 109 6e-19
seq30 95.1 1e-14
>seq476
Length=308794
Score = 141 bits (156), Expect = 1e-28
Identities = 265/387 (68%), Gaps = 2/387 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| |||| |||| ||||| ||||| | || |||||| | || || | ||
Sbjct 12595 CCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATCTACC 12536
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|| | | || || || ||||| || || || ||||| ||||||| ||| ||||
Sbjct 12535 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTC 12476
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
||| |||| || ||| | ||||| || ||||||||| | || || || ||| |||||||
Sbjct 12475 GCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 12416
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| |||||| | || |||||||| || |||||| || || | || ||| || |||
Sbjct 12415 TTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCTCACTTG 12356
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
||| || || ||| ||| ||| || || ||||||| || || | || |||
Sbjct 12355 AAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 12296
Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327
|| ||| | ||||| || || || |||| ||| ||||| | || | | |||
Sbjct 12295 CAAGAGTTCTTGACCGAGGCTCTTCCTTGTGC-TCTTCTGGGCATGAACGCCAACTTGAT 12237
Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354
| ||||||||| ||||||||||||||
Sbjct 12236 GAAGCAATACATTGAGTTCGTCGCCGA 12210
>seq18
Length=186891
Score = 109 bits (120), Expect = 6e-19
Identities = 142/194 (73%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || | || ||||| || |||||| |||| |||||| | | ||| | | |
Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCG 167063
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| ||||||||||| ||||||| ||||| |||
Sbjct 167064 ACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTC 167122
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || || || || || || |||| |||||||| ||||||||||| |||||
Sbjct 167123 ATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAA 167182
Query 40879 GAGGCCACGCTGCA 40892
||| | || || ||
Sbjct 167183 GAGTCTACTCTCCA 167196
Score = 96.9 bits (106), Expect = 4e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| || || || |||||| | || || || | |||||| | | |||| |||||
Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACG-TCAAGAG 166792
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| |||||||| ||| | || |||||||| | |||| || |||||
Sbjct 166793 CAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAA 166852
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||| ||| || |||||||||||||||||| ||||||| ||
Sbjct 166853 GCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTCA 166912
>seq30
Length=167504
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || ||| | || || ||||| || |||| ||| ||||| || || ||
Sbjct 89540 GACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAGCAACTCGAA 89599
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| || |||||| ||||||||||||||||||||| | || || ||||| || ||
Sbjct 89600 GACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTTA 89659
Query 40903 CG 40904
||
Sbjct 89660 CG 89661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215954119040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |