Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq476 141 1e-28 seq18 109 6e-19 seq30 95.1 1e-14 >seq476 Length=308794 Score = 141 bits (156), Expect = 1e-28 Identities = 265/387 (68%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||| ||||| ||||| | || |||||| | || || | || Sbjct 12595 CCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATCTACC 12536 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 || | | || || || ||||| || || || ||||| ||||||| ||| |||| Sbjct 12535 TTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTC 12476 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| |||| || ||| | ||||| || ||||||||| | || || || ||| ||||||| Sbjct 12475 GCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAG 12416 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | |||||| | || |||||||| || |||||| || || | || ||| || ||| Sbjct 12415 TTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCTCACTTG 12356 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| ||| ||| || || ||||||| || || | || ||| Sbjct 12355 AAGCATCGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 12296 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | ||||| || || || |||| ||| ||||| | || | | ||| Sbjct 12295 CAAGAGTTCTTGACCGAGGCTCTTCCTTGTGC-TCTTCTGGGCATGAACGCCAACTTGAT 12237 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354 | ||||||||| |||||||||||||| Sbjct 12236 GAAGCAATACATTGAGTTCGTCGCCGA 12210 >seq18 Length=186891 Score = 109 bits (120), Expect = 6e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || ||||| || |||||| |||| |||||| | | ||| | | | Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCG 167063 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||||||||| ||||||| ||||| ||| Sbjct 167064 ACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTC 167122 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || || || || |||| |||||||| ||||||||||| ||||| Sbjct 167123 ATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAA 167182 Query 40879 GAGGCCACGCTGCA 40892 ||| | || || || Sbjct 167183 GAGTCTACTCTCCA 167196 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || || |||||| | || || || | |||||| | | |||| ||||| Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACG-TCAAGAG 166792 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| |||||||| ||| | || |||||||| | |||| || ||||| Sbjct 166793 CAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAA 166852 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||| ||| || |||||||||||||||||| ||||||| || Sbjct 166853 GCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTCA 166912 >seq30 Length=167504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || ||| | || || ||||| || |||| ||| ||||| || || || Sbjct 89540 GACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAGCAACTCGAA 89599 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || |||||| ||||||||||||||||||||| | || || ||||| || || Sbjct 89600 GACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTTA 89659 Query 40903 CG 40904 || Sbjct 89660 CG 89661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215954119040