Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 6e-14 >seq18 Length=186891 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || ||||| ||||| || | || |||| | Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| |||| | || || || || ||||| || ||||| ||||| || ||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || || ||||| |||||| | || ||| | ||||| || Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| || ||| |||| ||||| Sbjct 167630 ATTCAAAAGGAGAGCACTCTGCACTTGGT 167658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451240627200