Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq18 104 3e-17
>seq18
Length=186891
Score = 104 bits (114), Expect = 3e-17
Identities = 162/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011
|||||||||| | | || | |||||| |||| ||||||||||||||||| |||||||
Sbjct 167681 ATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAAT 167622
Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071
| || || || | || || | ||||| || ||||| || | |||||| ||||| |
Sbjct 167621 CGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTG 167562
Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131
|| | | |||||| ||| ||| ||| |||| | | | ||||| || |
Sbjct 167561 GTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACT 167502
Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || || | || || || |||||||| | ||||| ||||| ||||||||
Sbjct 167501 CAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||| | |||| ||||||||| |||||||| || | || || || | || ||
Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 167371
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| ||||| || ||||| ||||||||||| ||||| | || | | |||||| ||| ||
Sbjct 167370 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC-TG 167312
Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | | ||| | | | || || ||||| || || | |||||||| ||
Sbjct 167311 AATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTT 167252
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| || || ||||| || ||||||||||||
Sbjct 167251 TCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221
Score = 89.7 bits (98), Expect = 6e-13
Identities = 130/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || ||||| ||||| || | || || || |||| || || ||||||||||| ||
Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| || || ||||| | || | || ||||||||| ||| || |||| |||
Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 167067
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||||||||||| || |||| ||||| || ||||| || | ||||| |
Sbjct 167066 TGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGA 167007
Query 43171 C 43171
|
Sbjct 167006 C 167006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571813997549120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |