Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq18 104 3e-17 >seq18 Length=186891 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 |||||||||| | | || | |||||| |||| ||||||||||||||||| ||||||| Sbjct 167681 ATTGTCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAAT 167622 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 | || || || | || || | ||||| || ||||| || | |||||| ||||| | Sbjct 167621 CGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTG 167562 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATT 43131 || | | |||||| ||| ||| ||| |||| | | | ||||| || | Sbjct 167561 GTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACT 167502 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | || || || |||||||| | ||||| ||||| |||||||| Sbjct 167501 CAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | |||| ||||||||| |||||||| || | || || || | || || Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 167371 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | ||||| || ||||| ||||||||||| ||||| | || | | |||||| ||| || Sbjct 167370 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC-TG 167312 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | | ||| | | | || || ||||| || || | |||||||| || Sbjct 167311 AATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTT 167252 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || ||||| || |||||||||||| Sbjct 167251 TCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||| || | || || || |||| || || ||||||||||| || Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || || ||||| | || | || ||||||||| ||| || |||| ||| Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 167067 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||||||||||| || |||| ||||| || ||||| || | ||||| | Sbjct 167066 TGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGA 167007 Query 43171 C 43171 | Sbjct 167006 C 167006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813997549120