Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18 105 4e-18 >seq18 Length=186891 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || || ||||||||||||| ||| | || ||||| ||||||||||||||| Sbjct 167412 TCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAA 167353 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||| ||||| || | | |||||| || ||||| ||||| | | Sbjct 167352 ATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTG 167293 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||||| || |||| |||||||| || || || ||||| || || Sbjct 167292 TCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACG 167233 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 167232 AAGATTTGCAT 167222 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| |||||||| ||||||||||| || Sbjct 167221 TCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGA 167162 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||| || || || ||||| || || ||||| || Sbjct 167161 AAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 167102 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | | || | |||| |||||||||| Sbjct 167101 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGAC 167042 Query 34342 GTCCACCGTGATGGTTTTGCCGGT 34365 || | ||||| || |||||||| Sbjct 167041 CTCGAGGGTGATAGTCTTGCCGGT 167018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070015530240