Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq18 105 4e-18
>seq18
Length=186891
Score = 105 bits (116), Expect = 4e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258
|| || || || ||||||||||||| ||| | || ||||| |||||||||||||||
Sbjct 167412 TCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAA 167353
Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318
||||| ||||| ||||| || | | |||||| || ||||| ||||| | |
Sbjct 167352 ATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTG 167293
Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378
| || | ||| | ||||| || |||| |||||||| || || || ||||| || ||
Sbjct 167292 TCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACG 167233
Query 34379 AAGATCTGCAT 34389
||||| |||||
Sbjct 167232 AAGATTTGCAT 167222
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | || |||| ||| | |||| |||||||| ||||||||||| ||
Sbjct 167221 TCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGA 167162
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| |||| || | ||||| || || || ||||| || || ||||| ||
Sbjct 167161 AAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 167102
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || ||||||||| ||||| ||| | | | | || | |||| ||||||||||
Sbjct 167101 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGAC 167042
Query 34342 GTCCACCGTGATGGTTTTGCCGGT 34365
|| | ||||| || ||||||||
Sbjct 167041 CTCGAGGGTGATAGTCTTGCCGGT 167018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070015530240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |