Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq104 289 3e-73
seq476 98.7 9e-16
seq18 82.4 7e-11
>seq104
Length=83277
Score = 289 bits (320), Expect = 3e-73
Identities = 576/848 (68%), Gaps = 4/848 (0%)
Strand=Plus/Plus
Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTAC 23084
||| || | |||||| || || ||||| ||| || || |||||| ||||| || || |
Sbjct 47657 CGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA-GTACTCGACAATCTCAGTGC 47715
Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144
| | ||| | || || || | ||| | ||||| || ||||| ||||| | ||
Sbjct 47716 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCAT 47775
Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
||||||| |||||| | || | || ||||| ||| | ||| | ||| | ||| |
Sbjct 47776 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACCAAA 47835
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| || || | | | || || ||| |||||| |||||| || | |||||
Sbjct 47836 GCTTTTGGGCTTTGATGC-TCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCATACAAA 47894
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
|| || || ||| ||||||| |||||||| || || | | | || ||||| |
Sbjct 47895 GCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACATCAAT 47954
Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383
|||| || |||||||| || |||| || ||||| || ||||| |||||||||
Sbjct 47955 GTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTAG 48014
Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443
|| || || ||||| || |||||||| || ||| ||||||| | ||| | || ||
Sbjct 48015 AAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCG 48074
Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503
|| || || || ||||| ||||| ||||| | ||| || || || || | ||| || ||
Sbjct 48075 AAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCA 48134
Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563
|| ||||| || || | || ||||||||| | |||| ||||| || || | ||||||
Sbjct 48135 CCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTG 48194
Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623
|| ||| | ||||| | | | ||| | || || | ||||||| | || |
Sbjct 48195 GAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGA 48254
Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683
|| || || || | || || ||||| || || ||||| ||||||||||| ||
Sbjct 48255 CCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATACCA 48314
Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743
|| ||||||||||| || | ||| | ||| || || || | ||| || | || |||
Sbjct 48315 TCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTA 48374
Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803
| || | ||| ||||| ||| |||||| || |||||| | ||||| | |||||
Sbjct 48375 CCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAG 48434
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| |||||||| || || || ||||| ||||| || |||| || |||||||| |||||
Sbjct 48435 GTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGCGCATAATCATA 48494
Query 23864 TATTGAGG 23871
| ||| ||
Sbjct 48495 TGTTGTGG 48502
>seq476
Length=308794
Score = 98.7 bits (108), Expect = 9e-16
Identities = 211/311 (68%), Gaps = 6/311 (2%)
Strand=Plus/Minus
Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040
|| || || || || || ||||| ||||| ||| || || | || || ||| ||
Sbjct 12517 GCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGGTTG 12458
Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100
||||| || ||||| ||| | || || || || |||||||||||| || || || |||
Sbjct 12457 AAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGATGAG 12398
Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGACGC 58158
|||||||| || || || || ||||| | | ||||||| ||| || | || | ||
Sbjct 12397 GGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCTCAC-TTG--AAGCATCGCCCAAGC 12341
Query 58159 GGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217
| ||| || || | | ||||||||||| || | ||| || | ||||| | |||
Sbjct 12340 AAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACC 12281
Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277
|| || || || || | || || |||||| | |||||| | |||||||||
Sbjct 12280 GAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAACTTGATGAAGCAATACATTGAG 12221
Query 58278 TTTGTTGCCGA 58288
|| || |||||
Sbjct 12220 TTCGTCGCCGA 12210
Score = 98.7 bits (108), Expect = 9e-16
Identities = 195/286 (68%), Gaps = 7/286 (2%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| ||||| || || ||||| | |||||| | || ||
Sbjct 12984 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 12925
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686
|| |||||||| ||||||| | | ||||| || ||| | | |||||
Sbjct 12924 TCCAAGGATCTCCACGATTGGAACAACAAGCTCAACGATGATGAACGTTACTTTATCTCC 12865
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||||| | || || ||||| || || || || |||||||||||||| | |||| |
Sbjct 12864 CACGTCCTCGCTTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTCGAGCGC 12805
Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
|| || || |||| ||| | | ||||| ||| ||| ||||| || ||| | |
Sbjct 12804 TT--CAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 12747
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850
| || ||| | || || || | || || || ||||||||||| ||
Sbjct 12746 TGGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGATACCTA 12701
>seq18
Length=186891
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || |||||| |||| ||||| || || || | || ||||| | ||
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||| ||||| || | || || |||||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGACCA 167568
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||| ||||| || ||||| || || | |||||||| ||
Sbjct 167569 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAA 167628
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||||||| || ||||| || |||| |||
Sbjct 167629 CATTCAAAAGGAGAGCACTCTGCACTTGGTGCTT 167662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763591671680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |