Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq104 289 3e-73 seq476 98.7 9e-16 seq18 82.4 7e-11 >seq104 Length=83277 Score = 289 bits (320), Expect = 3e-73 Identities = 576/848 (68%), Gaps = 4/848 (0%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTAC 23084 ||| || | |||||| || || ||||| ||| || || |||||| ||||| || || | Sbjct 47657 CGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACA-GTACTCGACAATCTCAGTGC 47715 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | | ||| | || || || | ||| | ||||| || ||||| ||||| | || Sbjct 47716 ACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCAT 47775 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||||||| |||||| | || | || ||||| ||| | ||| | ||| | ||| | Sbjct 47776 CCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACCAAA 47835 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | || || | | | || || ||| |||||| |||||| || | ||||| Sbjct 47836 GCTTTTGGGCTTTGATGC-TCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCATACAAA 47894 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || || || ||| ||||||| |||||||| || || | | | || ||||| | Sbjct 47895 GCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACATCAAT 47954 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| || |||||||| || |||| || ||||| || ||||| ||||||||| Sbjct 47955 GTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTAG 48014 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || || ||||| || |||||||| || ||| ||||||| | ||| | || || Sbjct 48015 AAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCG 48074 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || || || ||||| ||||| ||||| | ||| || || || || | ||| || || Sbjct 48075 AAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCA 48134 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || ||||| || || | || ||||||||| | |||| ||||| || || | |||||| Sbjct 48135 CCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTG 48194 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || ||| | ||||| | | | ||| | || || | ||||||| | || | Sbjct 48195 GAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGA 48254 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | || || ||||| || || ||||| ||||||||||| || Sbjct 48255 CCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATACCA 48314 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 || ||||||||||| || | ||| | ||| || || || | ||| || | || ||| Sbjct 48315 TCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTA 48374 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || | ||| ||||| ||| |||||| || |||||| | ||||| | ||||| Sbjct 48375 CCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCTGGACATCAAGTTGTAG 48434 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || |||||||| || || || ||||| ||||| || |||| || |||||||| ||||| Sbjct 48435 GTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGCGCATAATCATA 48494 Query 23864 TATTGAGG 23871 | ||| || Sbjct 48495 TGTTGTGG 48502 >seq476 Length=308794 Score = 98.7 bits (108), Expect = 9e-16 Identities = 211/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || || || || || ||||| ||||| ||| || || | || || ||| || Sbjct 12517 GCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGGTTG 12458 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAG 58100 ||||| || ||||| ||| | || || || || |||||||||||| || || || ||| Sbjct 12457 AAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGATGAG 12398 Query 58101 GGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAA--ACCGACGC 58158 |||||||| || || || || ||||| | | ||||||| ||| || | || | || Sbjct 12397 GGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCTCAC-TTG--AAGCATCGCCCAAGC 12341 Query 58159 GGGATCGCA-TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | ||| || || | | ||||||||||| || | ||| || | ||||| | ||| Sbjct 12340 AAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACC 12281 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || || | || || |||||| | |||||| | ||||||||| Sbjct 12280 GAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAACTTGATGAAGCAATACATTGAG 12221 Query 58278 TTTGTTGCCGA 58288 || || ||||| Sbjct 12220 TTCGTCGCCGA 12210 Score = 98.7 bits (108), Expect = 9e-16 Identities = 195/286 (68%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| ||||| || || ||||| | |||||| | || || Sbjct 12984 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 12925 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || |||||||| ||||||| | | ||||| || ||| | | ||||| Sbjct 12924 TCCAAGGATCTCCACGATTGGAACAACAAGCTCAACGATGATGAACGTTACTTTATCTCC 12865 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| | || || ||||| || || || || |||||||||||||| | |||| | Sbjct 12864 CACGTCCTCGCTTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTCGAGCGC 12805 Query 57747 TTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 || || || |||| ||| | | ||||| ||| ||| ||||| || ||| | | Sbjct 12804 TT--CAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 12747 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 | || ||| | || || || | || || || ||||||||||| || Sbjct 12746 TGGAGAACATCCACTCCGAGACCTACTCCCTCCTCATCGATACCTA 12701 >seq18 Length=186891 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| ||||| || || || | || ||||| | || Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||| ||||| || | || || ||||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGACCA 167568 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||| ||||| || ||||| || || | |||||||| || Sbjct 167569 ACAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAA 167628 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||||| || |||| ||| Sbjct 167629 CATTCAAAAGGAGAGCACTCTGCACTTGGTGCTT 167662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763591671680