Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq476 116 7e-21 seq57 109 1e-18 seq104 96.9 7e-15 >seq476 Length=308794 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||||||||| ||||| || |||||||| ||||| | ||||| ||||| |||| Sbjct 12522 TTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCT 12463 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| | || | || ||||||| |||| |||||| ||||| || || | | Sbjct 12462 GGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTG 12403 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 | || ||||| || |||||| |||||| | || || Sbjct 12402 ATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTT 12366 >seq57 Length=701840 Score = 109 bits (120), Expect = 1e-18 Identities = 205/298 (69%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386 ||| | |||||| ||| ||||| || || |||| | || || ||| | | | | Sbjct 623100 ATAAAAATCTGGGACGGAAATGGATCACGCGAATACCTCGATAGCGTAGGCCTTTCCCAC 623041 Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446 | |||| |||||| | ||||| || || || ||||||||||| |||||||| |||||| Sbjct 623040 CGCGCAGTAGGAGATCTTGGACCAGTCTATGGCTTCCAATGGCGCCATTTTGGGGCTGAA 622981 Query 35447 TA---TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA-- 35501 || |||| || | | |||||||| | ||||| | ||||| ||| ||| | Sbjct 622980 TATGTTGATGCC---GCAACGGATTATACGAGCAAGGGAGTCGATCAGTTG--CAAGAGG 622926 Query 35502 TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561 | | | | |||| | ||||| ||||| || |||| ||| ||| || ||||||| Sbjct 622925 TTATCGATAAGTTGAGGAATAATCCTTATGATCGACGGATTATTTTGAGTGCGTGGAATC 622866 Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | | |||| | | |||||||| || || || || || ||| ||| || |||||||| Sbjct 622865 CGAGGGATTTGAAACTTATGGCGCTGCCGCCTTGTCATATGTTTGCGCAGTTTTATGT 622808 >seq104 Length=83277 Score = 96.9 bits (106), Expect = 7e-15 Identities = 253/379 (67%), Gaps = 28/379 (7%) Strand=Plus/Plus Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248 || ||||||||||| || || || || | ||| ||||| |||||| ||||||||| Sbjct 47658 GATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGCAC 47717 Query 94249 AAATTTGAAGACTT--GATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTAT 94306 || || || ||| |||| | |||| ||| | ||||||| ||||| ||| | || Sbjct 47718 AAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCAT 47775 Query 94307 CCTT--AAAGCACACATAAGGTGTTCCAGTTTCGATACGTGCAGAATTAATTTGGTCGAA 94364 |||| |||||| | ||| |||| || || | | || | || || | Sbjct 47776 CCTTGTAAAGCATGAA--AGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGT--AC 47831 Query 94365 TAATGCACGTG--CCTTCACCACCTCTTT--ACCTTTGCCTTCAGCCTCATATTTCTCGT 94420 || || || | || | ||||| ||| |||||||||| ||| |||||||| | Sbjct 47832 CAAAGCTTTTGGGCTTTGATG--CTCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCAT 47889 Query 94421 ACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCACTCGTGGGGGCACA 94480 |||| |||| ||||| || || | |||||||| | ||||| ||||||| |||||||| Sbjct 47890 ACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACA 47949 Query 94481 TCAGGGACCA------ATTCTTCCCAGCCTTCACTCTCTCCATGAAGAGATCAGATACCC 94534 ||| | ||| ||||| || || | || |||||||||||| | | || Sbjct 47950 TCAATGTCCAGTCAAGGTTCTTTTCA------ACACGCTTCATGAAGAGATCTGGGATCC 48003 Query 94535 AGATAGCTGGGAAAAGATC 94553 ||| ||| ||| ||||| Sbjct 48004 AGAGAGCGTAGAAGAGATC 48022 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 94831 GTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGT 94890 || || || ||||| |||||||| || || | | | | | ||||||||| || |||||| Sbjct 48300 GTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGT 48359 Query 94891 TGGGG-TGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCT 94949 || | |||| ||| ||| || ||||||||||| || ||||| || || | || Sbjct 48360 TGTGCCTGTGG-TGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCT 48418 Query 94950 CGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGC 95009 ||||| | | || || || ||| ||| | ||| || ||||| || |||||||| Sbjct 48419 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGC 48478 Query 95010 CACACGCATAATCATGTCCTGAGGGCGCTCA 95040 || ||||||||||| | || || || ||| Sbjct 48479 AACGCGCATAATCATATGTTGTGGACGTTCA 48509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577609761320