Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq476 116 7e-21
seq57 109 1e-18
seq104 96.9 7e-15
>seq476
Length=308794
Score = 116 bits (128), Expect = 7e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||||||||||||||| ||||| || |||||||| ||||| | ||||| ||||| ||||
Sbjct 12522 TTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCT 12463
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035
|| | ||||| | || | || ||||||| |||| |||||| ||||| || || | |
Sbjct 12462 GGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTG 12403
Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
| || ||||| || |||||| |||||| | || ||
Sbjct 12402 ATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTT 12366
>seq57
Length=701840
Score = 109 bits (120), Expect = 1e-18
Identities = 205/298 (69%), Gaps = 10/298 (3%)
Strand=Plus/Minus
Query 35327 ATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGAT 35386
||| | |||||| ||| ||||| || || |||| | || || ||| | | | |
Sbjct 623100 ATAAAAATCTGGGACGGAAATGGATCACGCGAATACCTCGATAGCGTAGGCCTTTCCCAC 623041
Query 35387 AGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAA 35446
| |||| |||||| | ||||| || || || ||||||||||| |||||||| ||||||
Sbjct 623040 CGCGCAGTAGGAGATCTTGGACCAGTCTATGGCTTCCAATGGCGCCATTTTGGGGCTGAA 622981
Query 35447 TA---TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA-- 35501
|| |||| || | | |||||||| | ||||| | ||||| ||| ||| |
Sbjct 622980 TATGTTGATGCC---GCAACGGATTATACGAGCAAGGGAGTCGATCAGTTG--CAAGAGG 622926
Query 35502 TACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATC 35561
| | | | |||| | ||||| ||||| || |||| ||| ||| || |||||||
Sbjct 622925 TTATCGATAAGTTGAGGAATAATCCTTATGATCGACGGATTATTTTGAGTGCGTGGAATC 622866
Query 35562 CTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
| | |||| | | |||||||| || || || || || ||| ||| || ||||||||
Sbjct 622865 CGAGGGATTTGAAACTTATGGCGCTGCCGCCTTGTCATATGTTTGCGCAGTTTTATGT 622808
>seq104
Length=83277
Score = 96.9 bits (106), Expect = 7e-15
Identities = 253/379 (67%), Gaps = 28/379 (7%)
Strand=Plus/Plus
Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248
|| ||||||||||| || || || || | ||| ||||| |||||| |||||||||
Sbjct 47658 GATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGCAC 47717
Query 94249 AAATTTGAAGACTT--GATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTAT 94306
|| || || ||| |||| | |||| ||| | ||||||| ||||| ||| | ||
Sbjct 47718 AAGTTGGAG--CTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCAT 47775
Query 94307 CCTT--AAAGCACACATAAGGTGTTCCAGTTTCGATACGTGCAGAATTAATTTGGTCGAA 94364
|||| |||||| | ||| |||| || || | | || | || || |
Sbjct 47776 CCTTGTAAAGCATGAA--AGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGT--AC 47831
Query 94365 TAATGCACGTG--CCTTCACCACCTCTTT--ACCTTTGCCTTCAGCCTCATATTTCTCGT 94420
|| || || | || | ||||| ||| |||||||||| ||| |||||||| |
Sbjct 47832 CAAAGCTTTTGGGCTTTGATG--CTCTTGCGACCCTTGCCTTCAGACTCGTATTTCTCAT 47889
Query 94421 ACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCACTCGTGGGGGCACA 94480
|||| |||| ||||| || || | |||||||| | ||||| ||||||| ||||||||
Sbjct 47890 ACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACA 47949
Query 94481 TCAGGGACCA------ATTCTTCCCAGCCTTCACTCTCTCCATGAAGAGATCAGATACCC 94534
||| | ||| ||||| || || | || |||||||||||| | | ||
Sbjct 47950 TCAATGTCCAGTCAAGGTTCTTTTCA------ACACGCTTCATGAAGAGATCTGGGATCC 48003
Query 94535 AGATAGCTGGGAAAAGATC 94553
||| ||| ||| |||||
Sbjct 48004 AGAGAGCGTAGAAGAGATC 48022
Score = 89.7 bits (98), Expect = 1e-12
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 94831 GTATCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGT 94890
|| || || ||||| |||||||| || || | | | | | ||||||||| || ||||||
Sbjct 48300 GTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGT 48359
Query 94891 TGGGG-TGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCT 94949
|| | |||| ||| ||| || ||||||||||| || ||||| || || | ||
Sbjct 48360 TGTGCCTGTGG-TGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCT 48418
Query 94950 CGACATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGC 95009
||||| | | || || || ||| ||| | ||| || ||||| || ||||||||
Sbjct 48419 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGC 48478
Query 95010 CACACGCATAATCATGTCCTGAGGGCGCTCA 95040
|| ||||||||||| | || || || |||
Sbjct 48479 AACGCGCATAATCATATGTTGTGGACGTTCA 48509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989577609761320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |