Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq104 273 3e-68 seq476 111 2e-19 >seq104 Length=83277 Score = 273 bits (302), Expect = 3e-68 Identities = 1323/2068 (64%), Gaps = 55/2068 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164 || || |||| || ||||||||||| || | || || | || || | || Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864 Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924 Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284 ||| || ||||| || ||||||| || || |||| ||| ||||| |||||| Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984 Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 |||| | || || || |||||||| || | || || | ||||| || | ||| Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | | || | | | |||| || ||||| || || ||||| ||||| Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 || | || | |||| || || || |||||| || || | |||| || || Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | ||| ||| || ||||| |||||||| || || | ||||| || | | || Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224 Query 62522 GTATGTTCTG--ATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAAC 62578 || ||| | || | | ||| || | |||||| ||||||||| | ||| ||| Sbjct 47225 GT--GTTGAGCAATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTAAC 47281 Query 62579 ANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATA 62638 | |||||| || || || ||| || ||| ||||| ||||| Sbjct 47282 ACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATA 47341 Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 62696 ||| || | | | || | | | || || || ||| ||| ||||||||| Sbjct 47342 TGGACCATGAATTTTTGCCAACT--CCACGGAAGCAGTCAAAGCAGCGTGGTAAATGGTT 47399 Query 62697 TCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 || ||||| | | || || | |||| ||||| || || || ||| | ||||| Sbjct 47400 TCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAG 47457 Query 62756 AATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | || || || || | ||||||||||| | | | |||||||| || | ||| | Sbjct 47458 CCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-G 47516 Query 62815 AGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873 |||| || || |||| || ||||| || | ||| ||||| ||||| | || || Sbjct 47517 CTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTG 47576 Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTATTAC 62929 || | ||||| | || || | || || | || ||| | | || | ||| | Sbjct 47577 ACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCA 47636 Query 62930 AAACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 | | ||||| | |||| ||||||| ||| || || || ||||||| | | | || Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACA 47695 Query 62988 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | | ||||||||||| | || | ||| || || | ||| | ||| || Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||||| ||| || |||||||| ||||| ||||| || | || || ||| |||||| Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 || | || | | ||| | | | || || || | ||| | |||| | || Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC-CT 47870 Query 63167 T-----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 | |||||| |||||| ||||||||||| || | || | | |||||| | Sbjct 47871 TCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCA 47930 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 ||||| || | || |||||||| | ||| || || | | || || ||||| ||| Sbjct 47931 GGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAG 47990 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341 ||||| || ||||| ||||| || ||||| | | | | ||||| ||||| Sbjct 47991 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 48050 Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401 |||||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| Sbjct 48051 TTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCG 48110 Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461 | | | ||||| || ||||| || || ||||| | |||||||||||||| || ||||| Sbjct 48111 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170 Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521 | | ||| |||| ||| ||||| || | || || ||||| | ||||| | || | Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230 Query 63522 GCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 ||||| || | | |||| ||||| || || || || | || || || | || | Sbjct 48231 GCACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCAC 48288 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | ||| || ||||| ||||| || || ||||| || || |||||| | || || | Sbjct 48289 AAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGC 48348 Query 63640 AGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | || ||| | | | || || || || | || || || ||||| || Sbjct 48349 AGGATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTG 48407 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || |||| || | | ||||| ||||| || || | || |||||| || Sbjct 48408 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 ||||| || || || ||||| | ||| || || || | |||| || ||| | | Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGG 48527 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63876 | | || ||| || | || || ||||| || || | ||| ||||| || | Sbjct 48528 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCAC 48585 Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC-CATGGTA 63935 | ||||| | |||| | || ||||||| ||| || || |||| ||| ||| | Sbjct 48586 GGTCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT- 48644 Query 63936 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994 | ||| || || || || | || ||| |||| || ||||||| | |||| || Sbjct 48645 -TGTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTC 48703 Query 63995 CTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053 || || | | | ||| | || || |||| |||||| ||||| || | || |||| Sbjct 48704 GGAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTC 48762 Query 64054 TGGCGGCTAGAATGGCATAATCCGGATG 64081 | || || || ||||||||||| || || Sbjct 48763 TTGCTGCGAGGATGGCATAATCGGGGTG 48790 >seq476 Length=308794 Score = 111 bits (122), Expect = 2e-19 Identities = 291/443 (66%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| | ||||| || ||||| || ||||| |||||| | | || || || Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| || || || || |||| ||| ||||||| || | | || | ||||| Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200 Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 | | ||| |||||||| || || ||| ||||||| | ||||| || | Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 || | ||||||||| | || | || ||||| ||||| || || | || || Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 | || | | | | || || |||| || || || | | |||||| Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || ||| ||| |||||||| || | || || ||||| || || || || || | | Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || ||||||||||| || | ||| || ||||| ||||| || || |||||||| || Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500 Query 33708 TCTACTGCAGCAAAGGCAATAAG 33730 || || ||||||||||||| ||| Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813632149120