Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq104 273 3e-68
seq476 111 2e-19
>seq104
Length=83277
Score = 273 bits (302), Expect = 3e-68
Identities = 1323/2068 (64%), Gaps = 55/2068 (3%)
Strand=Plus/Plus
Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105
||||| || || || || || || | | ||||| |||||||||||||| || || |||
Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805
Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62164
|| || |||| || ||||||||||| || | || || | || || | ||
Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864
Query 62165 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62224
||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | |
Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924
Query 62225 GATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62284
||| || ||||| || ||||||| || || |||| ||| ||||| ||||||
Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984
Query 62285 GTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341
|||| | || || || |||||||| || | || || | ||||| || | |||
Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044
Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401
||| | | | || | | | |||| || ||||| || || ||||| |||||
Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104
Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461
|| | || | |||| || || || |||||| || || | |||| || ||
Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164
Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521
| ||| ||| || ||||| |||||||| || || | ||||| || | | ||
Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224
Query 62522 GTATGTTCTG--ATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAAC 62578
|| ||| | || | | ||| || | |||||| ||||||||| | ||| |||
Sbjct 47225 GT--GTTGAGCAATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTAAC 47281
Query 62579 ANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATA 62638
| |||||| || || || ||| || ||| ||||| |||||
Sbjct 47282 ACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATA 47341
Query 62639 TGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAATGCACCGTAATAAATGGTT 62696
||| || | | | || | | | || || || ||| ||| |||||||||
Sbjct 47342 TGGACCATGAATTTTTGCCAACT--CCACGGAAGCAGTCAAAGCAGCGTGGTAAATGGTT 47399
Query 62697 TCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755
|| ||||| | | || || | |||| ||||| || || || ||| | |||||
Sbjct 47400 TCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAG 47457
Query 62756 AATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814
| || || || || | ||||||||||| | | | |||||||| || | ||| |
Sbjct 47458 CCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-G 47516
Query 62815 AGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62873
|||| || || |||| || ||||| || | ||| ||||| ||||| | || ||
Sbjct 47517 CTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTG 47576
Query 62874 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTATTAC 62929
|| | ||||| | || || | || || | || ||| | | || | ||| |
Sbjct 47577 ACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCA 47636
Query 62930 AAACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987
| | ||||| | |||| ||||||| ||| || || || ||||||| | | | ||
Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACA 47695
Query 62988 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046
|| | | ||||||||||| | || | ||| || || | ||| | ||| ||
Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755
Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106
||||||| ||| || |||||||| ||||| ||||| || | || || ||| ||||||
Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166
|| | || | | ||| | | | || || || | ||| | |||| | ||
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC-CT 47870
Query 63167 T-----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221
| |||||| |||||| ||||||||||| || | || | | |||||| |
Sbjct 47871 TCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCA 47930
Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281
||||| || | || |||||||| | ||| || || | | || || ||||| |||
Sbjct 47931 GGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAG 47990
Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTA 63341
||||| || ||||| ||||| || ||||| | | | | ||||| |||||
Sbjct 47991 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 48050
Query 63342 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63401
|||||| ||||| |||||| | | || ||| | ||||| || || | ||| |||||
Sbjct 48051 TTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCG 48110
Query 63402 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63461
| | | ||||| || ||||| || || ||||| | |||||||||||||| || |||||
Sbjct 48111 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170
Query 63462 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTG 63521
| | ||| |||| ||| ||||| || | || || ||||| | ||||| | || |
Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230
Query 63522 GCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579
||||| || | | |||| ||||| || || || || | || || || | || |
Sbjct 48231 GCACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCAC 48288
Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639
| ||| || ||||| ||||| || || ||||| || || |||||| | || || |
Sbjct 48289 AAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGC 48348
Query 63640 AGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
|| || | || ||| | | | || || || || | || || || ||||| ||
Sbjct 48349 AGGATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTG 48407
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758
|| |||| || | | ||||| ||||| || || | || |||||| ||
Sbjct 48408 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467
Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818
||||| || || || ||||| | ||| || || || | |||| || ||| | |
Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGG 48527
Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63876
| | || ||| || | || || ||||| || || | ||| ||||| || |
Sbjct 48528 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCAC 48585
Query 63877 GTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC-CATGGTA 63935
| ||||| | |||| | || ||||||| ||| || || |||| ||| ||| |
Sbjct 48586 GGTCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT- 48644
Query 63936 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63994
| ||| || || || || | || ||| |||| || ||||||| | |||| ||
Sbjct 48645 -TGTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTC 48703
Query 63995 CTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053
|| || | | | ||| | || || |||| |||||| ||||| || | || ||||
Sbjct 48704 GGAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTC 48762
Query 64054 TGGCGGCTAGAATGGCATAATCCGGATG 64081
| || || || ||||||||||| || ||
Sbjct 48763 TTGCTGCGAGGATGGCATAATCGGGGTG 48790
>seq476
Length=308794
Score = 111 bits (122), Expect = 2e-19
Identities = 291/443 (66%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|||||||| ||| | ||||| || ||||| || ||||| |||||| | | || || ||
Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
||||| || || || || |||| ||| ||||||| || | | || | |||||
Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200
Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467
| | ||| |||||||| || || ||| ||||||| | ||||| || |
Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260
Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527
|| | ||||||||| | || | || ||||| ||||| || || | || ||
Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320
Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587
| || | | | | || || |||| || || || | | ||||||
Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380
Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647
|| ||| ||| |||||||| || | || || ||||| || || || || || | |
Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440
Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707
|| ||||||||||| || | ||| || ||||| ||||| || || |||||||| ||
Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500
Query 33708 TCTACTGCAGCAAAGGCAATAAG 33730
|| || ||||||||||||| |||
Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629813632149120
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