Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq104 95.1 1e-14
>seq104
Length=83277
Score = 95.1 bits (104), Expect = 1e-14
Identities = 294/450 (65%), Gaps = 14/450 (3%)
Strand=Plus/Plus
Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166
|| || ||||| | ||| ||||||||||| || | || || | | || || || |
Sbjct 48066 AGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 48125
Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226
|| | ||| || |||| || ||||||| | ||||| || | | || | ||| || ||
Sbjct 48126 TTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACA 48185
Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282
|| || || || || |||||| |||| | ||||||| |||| | || || || |
Sbjct 48186 ATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGA 48245
Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342
|| || || | || || ||||| || | ||||| || | || || ||| || ||
Sbjct 48246 AC--ATTGAGA--CCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGT 48301
Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA---AAACAACTAGACAT 38399
|| | ||||| || || ||||| ||||| || || | ||| || || || |
Sbjct 48302 GTCGTAGATACCATCAATGCTGTCCTCCTTCAT--GTCG-ATAAGGAAGCAGGATGAAAG 48358
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||| | | ||| || || || || | ||| || || || || |||| ||||
Sbjct 48359 TTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCT 48418
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| | || || || || || || | || ||||| ||||||| || || | ||
Sbjct 48419 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGC 48478
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|| | ||| | |||||||||||| | |||
Sbjct 48479 AACGCGCATAATCATATGTTGTGGACGTTC 48508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468521848293760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |