Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq104 95.1 1e-14 >seq104 Length=83277 Score = 95.1 bits (104), Expect = 1e-14 Identities = 294/450 (65%), Gaps = 14/450 (3%) Strand=Plus/Plus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || ||||| | ||| ||||||||||| || | || || | | || || || | Sbjct 48066 AGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACCAGGACGC 48125 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | ||| || |||| || ||||||| | ||||| || | | || | ||| || || Sbjct 48126 TTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACA 48185 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282 || || || || || |||||| |||| | ||||||| |||| | || || || | Sbjct 48186 ATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGA 48245 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342 || || || | || || ||||| || | ||||| || | || || ||| || || Sbjct 48246 AC--ATTGAGA--CCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGT 48301 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATA---AAACAACTAGACAT 38399 || | ||||| || || ||||| ||||| || || | ||| || || || | Sbjct 48302 GTCGTAGATACCATCAATGCTGTCCTCCTTCAT--GTCG-ATAAGGAAGCAGGATGAAAG 48358 Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||| | | ||| || || || || | ||| || || || || |||| |||| Sbjct 48359 TTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAGTATTTGCT 48418 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | || || || || || || | || ||||| ||||||| || || | || Sbjct 48419 GGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGC 48478 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | ||| | |||||||||||| | ||| Sbjct 48479 AACGCGCATAATCATATGTTGTGGACGTTC 48508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468521848293760