Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq104 318 8e-82 seq476 122 1e-22 >seq104 Length=83277 Score = 318 bits (352), Expect = 8e-82 Identities = 1335/2067 (65%), Gaps = 53/2067 (3%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 78836 || || |||| || |||||||||||| || | || || | || || | || Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 ||| || ||||| || ||||||| || || |||| ||| ||||| |||||| Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984 Query 78957 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 |||| | || || || |||||||| || || || || | ||||| || | || Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | | || | | | |||| || || || || || || || ||||| Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | || | |||| || || || ||||||||| || | | || || || Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | ||| ||| || || ||||||||||| || || | ||||| || | | || Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224 Query 79194 GTAT-GATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 || | || | | | ||| || | |||||||||||||||| | || |||| Sbjct 47225 GTGTTGAGCAATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTAACAC 47283 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAG 79312 ||| | |||||||| || || || || ||| ||| |||||| ||||| | Sbjct 47284 CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATG 47343 Query 79313 GTCCTTCCTTTTCGGCTAATTC-AC--AACTCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 | || | ||| || || || || || | | || || ||| |||||||||| Sbjct 47344 GACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTTT 47400 Query 79370 CGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA 79428 |||| || | | || || | |||| |||||| | || || ||| | ||||| Sbjct 47401 CGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAGC 47458 Query 79429 ATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 | || || || || | ||||||||||| | | | |||||||| || | ||| | Sbjct 47459 CAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GC 47517 Query 79488 AATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGA 79546 |||| || || |||| || ||||| || | ||| ||||| ||||| | ||| ||| Sbjct 47518 TCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGA 47577 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCCATCTATTA--CAA 79603 | | ||||| | || || | || || | || ||| || | | ||| | ||| Sbjct 47578 CGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAA 47637 Query 79604 -ACATGTTC--AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA- 79659 | ||||| | || | ||||||| ||| ||||| || ||||||| | | | || Sbjct 47638 CATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACAG 47696 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 || | | || |||||||| | ||| | ||||| || | ||| | ||| ||| Sbjct 47697 TACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTA 47756 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 |||||| ||| || |||||||| ||||| ||||| || | || || ||| |||||| Sbjct 47757 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCC 47816 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCT 79836 || | || | | ||| | | | || || || | |||| | ||| ||| Sbjct 47817 TCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCTTCA 47873 Query 79837 CTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA 79896 ||||||| ||| || ||||||||||| || | || ||| | ||||||||| Sbjct 47874 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGA 47933 Query 79897 CATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGA 79954 || |||| || |||||||| | ||| || | || ||| || || ||||| |||| Sbjct 47934 CACTCGTTGGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATGAAGA 47991 Query 79955 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTAT 80014 |||| || ||||| ||||| || ||||| | || | | |||||| ||||| | Sbjct 47992 GATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGT 48051 Query 80015 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 80074 ||||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| | Sbjct 48052 TCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGA 48111 Query 80075 TAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 80134 | | || || || ||||| || || ||||| | |||||||||||||| || |||||| Sbjct 48112 AAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTC 48171 Query 80135 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGG 80194 | ||| |||| ||| || ||||| | || || || || | ||||| || | | Sbjct 48172 GAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCG 48231 Query 80195 CACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 |||| || | | |||| ||||| || || || || | || || || | || || Sbjct 48232 CACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACA 48289 Query 80253 TCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACA 80312 ||| || || || ||||| || || ||||| || || |||||| | || || || Sbjct 48290 AATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 48349 Query 80313 GCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 | || | || ||| | | || || || || | || || || ||||| || | Sbjct 48350 GGATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGA 48408 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 | |||| |||| | ||||| ||||| || || | || |||||| || | Sbjct 48409 AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGA 48468 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 |||| || || || ||||| | ||| || || || | |||| ||||||| || | Sbjct 48469 TTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGC 48528 Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCG 80549 | | || ||| || | || || ||||| || || | ||| ||||| || || Sbjct 48529 GGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACG 48586 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATGGTGA 80608 ||||| | |||| | |||||||| | ||| || || |||| ||| ||| | Sbjct 48587 GTCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT-- 48644 Query 80609 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 80667 | ||| || || || || | || ||| |||| || ||||||| | |||| || Sbjct 48645 TGTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTCG 48704 Query 80668 TCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 80726 || || | | | ||| | || || |||| |||||| ||||| || || || ||||| Sbjct 48705 GAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTCT 48763 Query 80727 GGCGGCTAAAATGGCATAATCTGGATG 80753 || || | ||||||||||| || || Sbjct 48764 TGCTGCGAGGATGGCATAATCGGGGTG 48790 >seq476 Length=308794 Score = 122 bits (134), Expect = 1e-22 Identities = 337/515 (65%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||| | ||||| || ||||| || ||||| |||||| | | || || || Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| || || || || |||| ||| || |||| || | | || | ||||| Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200 Query 49789 AAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 49845 | | ||| ||||| || || || ||| ||||||| | ||||| || | | Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || | ||||||||| | || | || ||||| ||||| || || || || || Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 | | || | | | | || || ||||| || || || | | |||||| Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 || ||| ||| |||||||| || | || | |||||||| || || || || | | Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 || ||||||||||| || | ||| || ||||| || || || ||| |||||||| || Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCAC 50142 || || || |||||||||||||| | | || | | | | |||| || ||||| Sbjct 12501 TCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGATTCCTTGTCTTGGATCCAT 12560 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 |||||||||||| ||||| || | ||||| Sbjct 12561 CGGACAGCCCAATCGGCTTTCTTCTTGATGCAAGG 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264274906560