Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq104 241 2e-58
seq476 123 3e-23
>seq104
Length=83277
Score = 241 bits (266), Expect = 2e-58
Identities = 1308/2065 (63%), Gaps = 49/2065 (2%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||| || || | || || || | ||||| ||||||||||| || || || |||
Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| || |||| || ||||||||||| || | || | | || || |||
Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 46865
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|| || ||||| || ||| |||||| ||||| || || | ||| |||||||| | | |
Sbjct 46866 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 46925
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
|| || ||||| || ||||||| || || |||| ||| ||||| ||||||
Sbjct 46926 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAATA 46985
Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097
|||| | || || || |||||||| || ||||| || | || || || | || |
Sbjct 46986 TTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGAC 47045
Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157
|| | | | || | | | |||| || || || || || || || ||||||
Sbjct 47046 CAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCCA 47105
Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217
| | || | |||| || || || |||||| || || | |||| || ||
Sbjct 47106 GCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACCA 47165
Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277
| ||| ||| || ||||| |||||||| || || | | ||| || | | ||
Sbjct 47166 AGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCCG 47225
Query 71278 TGT-GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336
||| || | | | ||| || | |||||| ||||||||| | ||| |||
Sbjct 47226 TGTTGAGCAATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTAACACC 47284
Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396
||| || || ||| ||| ||||| || |||||
Sbjct 47285 CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATGG 47344
Query 71397 TCCTTCT-TTTTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453
|| | |||| | | | | ||| || | | || || | | |||||||||||
Sbjct 47345 ACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTTTC 47401
Query 71454 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512
||| || | | || || | |||| ||||| || || || ||| | |||||
Sbjct 47402 GAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAGCC 47459
Query 71513 TA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571
| || || || || | |||||||| || | | | ||||||||||| | ||| |
Sbjct 47460 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 47518
Query 71572 ATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630
|||| || || |||| || ||||| || | ||| ||||| ||||| | || ||||
Sbjct 47519 CTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 47578
Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA----TCTATTACAA 71686
| ||||| | || || | || || | || ||| | | || ||| | |
Sbjct 47579 GACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAAC 47638
Query 71687 ACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744
| | ||| || |||| ||||||| ||| ||||| || ||||||| | | ||
Sbjct 47639 ATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTA 47698
Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804
| | ||| |||||||| | || | |||||| || | ||| | ||| |||||
Sbjct 47699 CTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACT 47758
Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864
|||| ||| || |||||||| ||||| || || || | || || ||| |||||| ||
Sbjct 47759 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTC 47818
Query 71865 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCT 71921
| || | | ||| | | | || || || | |||| | ||| |||
Sbjct 47819 AAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCTTCAGA 47875
Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981
||||||| ||| || ||||||||||| || | | | | | |||||||||||
Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935
Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039
|| || || |||||||||| ||| || | || ||| || || ||||| ||||||
Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATGAAGAGA 47993
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
|| || ||||| ||||| || ||||| | || | | |||||| ||||| |||
Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| | |
Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113
Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219
| || || || ||||| || || ||||| | |||||||||||||| || ||||||
Sbjct 48114 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGA 48173
Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279
| ||| |||| ||| || ||||| || || || || | ||||| || | |||
Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCA 48233
Query 72280 CGAATATTGCTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337
|| || || | |||| ||||| || || || || | || || || | || ||
Sbjct 48234 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAA 48291
Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397
||| || || || ||||| || || || || || ||| |||||| | || || |||
Sbjct 48292 TTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 48351
Query 72398 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
|| | || ||| | | || || || || | || || || ||||| || ||
Sbjct 48352 ATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516
|||| |||| | ||||| ||||| || || | || |||||| || |||
Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATT 48470
Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576
|| || || || ||||| | |||||| || || | |||| ||||||| || |
Sbjct 48471 CCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGCGG 48530
Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 72634
| | || ||| || | || || ||||| || || | ||| ||||| || || |
Sbjct 48531 AGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGGT 48588
Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGATA 72693
|||| | |||| | || ||||| | ||| || || |||| ||| ||| | |
Sbjct 48589 CGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT--TG 48646
Query 72694 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 72752
||| || || || || | || ||| |||| || ||||||| | |||| ||
Sbjct 48647 TTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTCGGA 48706
Query 72753 CATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 72811
|| || | | | ||| | || || |||| |||||| ||||| || || || ||||| |
Sbjct 48707 GATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTCTTG 48765
Query 72812 CGGCTAGAATGGCATAATCTGGATG 72836
| || || ||||||||||| || ||
Sbjct 48766 CTGCGAGGATGGCATAATCGGGGTG 48790
>seq476
Length=308794
Score = 123 bits (136), Expect = 3e-23
Identities = 294/443 (66%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||| | ||||| || ||||| || |||||||||||| | | || || ||
Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
||||| || || || || |||| ||| || |||| || | | || | |||||
Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200
Query 41894 AAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 41950
| | ||| |||| ||| || || ||| ||||||| | ||||| || | |
Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260
Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010
|| | ||||||||| | || | || ||||| ||||| || || || || ||
Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320
Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070
| | |||| | | | || || ||| | || || || | | ||||||
Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380
Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130
|| ||| ||| ||||||||||| | || || |||||||| || || || || | |
Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440
Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190
|| ||||||||||| || | ||| || || || || || || ||| |||||||| ||
Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500
Query 42191 TCTACTGCCGCAAAGGCAATAAG 42213
|| || || |||||||||| |||
Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671134971823040
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