Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq104 241 2e-58 seq476 123 3e-23 >seq104 Length=83277 Score = 241 bits (266), Expect = 2e-58 Identities = 1308/2065 (63%), Gaps = 49/2065 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| || || | || || || | ||||| ||||||||||| || || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || |||| || ||||||||||| || | || | | || || ||| Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTCATG 46865 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || ||||| || ||| |||||| ||||| || || | ||| |||||||| | | | Sbjct 46866 TGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGACG 46925 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 || || ||||| || ||||||| || || |||| ||| ||||| |||||| Sbjct 46926 ATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAATA 46985 Query 71041 TTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 |||| | || || || |||||||| || ||||| || | || || || | || | Sbjct 46986 TTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGAC 47045 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || | | | || | | | |||| || || || || || || || |||||| Sbjct 47046 CAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCCA 47105 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | |||| || || || |||||| || || | |||| || || Sbjct 47106 GCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACCA 47165 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 | ||| ||| || ||||| |||||||| || || | | ||| || | | || Sbjct 47166 AGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCCG 47225 Query 71278 TGT-GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| || | | | ||| || | |||||| ||||||||| | ||| ||| Sbjct 47226 TGTTGAGCAATCTGTTGCTTCAAGCTAG-CCCAATCCCAAAGATCGGTAGGTGTAACACC 47284 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 ||| || || ||| ||| ||||| || ||||| Sbjct 47285 CCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATGG 47344 Query 71397 TCCTTCT-TTTTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATAATAAATGGTTTC 71453 || | |||| | | | | ||| || | | || || | | ||||||||||| Sbjct 47345 ACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTTTC 47401 Query 71454 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAA 71512 ||| || | | || || | |||| ||||| || || || ||| | ||||| Sbjct 47402 GAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAGCC 47459 Query 71513 TA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 | || || || || | |||||||| || | | | ||||||||||| | ||| | Sbjct 47460 AAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-GCT 47518 Query 71572 ATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 71630 |||| || || |||| || ||||| || | ||| ||||| ||||| | || |||| Sbjct 47519 CTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGAC 47578 Query 71631 TATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA----TCTATTACAA 71686 | ||||| | || || | || || | || ||| | | || ||| | | Sbjct 47579 GACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAAC 47638 Query 71687 ACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATA 71744 | | ||| || |||| ||||||| ||| ||||| || ||||||| | | || Sbjct 47639 ATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTA 47698 Query 71745 TTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 71804 | | ||| |||||||| | || | |||||| || | ||| | ||| ||||| Sbjct 47699 CTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACT 47758 Query 71805 CTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 71864 |||| ||| || |||||||| ||||| || || || | || || ||| |||||| || Sbjct 47759 CTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTC 47818 Query 71865 TATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT---TTCTCT 71921 | || | | ||| | | | || || || | |||| | ||| ||| Sbjct 47819 AAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCT---CTTGCGACCCTTGCCTTCAGA 47875 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 ||||||| ||| || ||||||||||| || | | | | | ||||||||||| Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || |||||||||| ||| || | || ||| || || ||||| |||||| Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCTTCATGAAGAGA 47993 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || || ||||| ||||| || ||||| | || | | |||||| ||||| ||| Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| | | Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || ||||| | |||||||||||||| || |||||| Sbjct 48114 GCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGA 48173 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| ||| || ||||| || || || || | ||||| || | ||| Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCA 48233 Query 72280 CGAATATTGCTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || || || | |||| ||||| || || || || | || || || | || || Sbjct 48234 CGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAA 48291 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 ||| || || || ||||| || || || || || ||| |||||| | || || ||| Sbjct 48292 TTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGG 48351 Query 72398 TAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || | || ||| | | || || || || | || || || ||||| || || Sbjct 48352 ATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAAG 48410 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 |||| |||| | ||||| ||||| || || | || |||||| || ||| Sbjct 48411 TATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATT 48470 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 72576 || || || || ||||| | |||||| || || | |||| ||||||| || | Sbjct 48471 CCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGCGG 48530 Query 72577 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 72634 | | || ||| || | || || ||||| || || | ||| ||||| || || | Sbjct 48531 AGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGGT 48588 Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTGATA 72693 |||| | |||| | || ||||| | ||| || || |||| ||| ||| | | Sbjct 48589 CGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT--TG 48646 Query 72694 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 72752 ||| || || || || | || ||| |||| || ||||||| | |||| || Sbjct 48647 TTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTCGGA 48706 Query 72753 CATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 72811 || || | | | ||| | || || |||| |||||| ||||| || || || ||||| | Sbjct 48707 GATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTCTTG 48765 Query 72812 CGGCTAGAATGGCATAATCTGGATG 72836 | || || ||||||||||| || || Sbjct 48766 CTGCGAGGATGGCATAATCGGGGTG 48790 >seq476 Length=308794 Score = 123 bits (136), Expect = 3e-23 Identities = 294/443 (66%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| || ||||| || |||||||||||| | | || || || Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| || || || || |||| ||| || |||| || | | || | ||||| Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200 Query 41894 AAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 41950 | | ||| |||| ||| || || ||| ||||||| | ||||| || | | Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || | ||||||||| | || | || ||||| ||||| || || || || || Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320 Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | | |||| | | | || || ||| | || || || | | |||||| Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || ||| ||| ||||||||||| | || || |||||||| || || || || | | Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || ||||||||||| || | ||| || || || || || || ||| |||||||| || Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500 Query 42191 TCTACTGCCGCAAAGGCAATAAG 42213 || || || |||||||||| ||| Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134971823040