Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq18 120 7e-22
seq30 96.9 8e-15
seq476 93.3 1e-13
>seq18
Length=186891
Score = 120 bits (132), Expect = 7e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || | ||| | ||| || || || || ||||| ||||| || | |||| || ||
Sbjct 167434 AAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATC 167375
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| | ||| || || || ||||| || | |||||| ||||| || || || || |||||
Sbjct 167374 CTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATC 167315
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| | ||||| || || | ||||| || ||| ||||| | || || ||
Sbjct 167314 CTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGT 167255
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| |||||||| || || || || || ||||||
Sbjct 167254 CTTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221
Score = 114 bits (126), Expect = 3e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| ||||||||||| || ||||| || || || | ||||| || ||||| || |||
Sbjct 167190 GTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCA 167131
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||||| || || || || || || || || || ||||| | ||
Sbjct 167130 GCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 167071
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||||||||| | ||| ||||| || || |||||||| || ||
Sbjct 167070 ACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGT 167018
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || ||||| ||||| | ||||| || || || || |||
Sbjct 166906 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCGAGCTGCTTGCCA 166847
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | | || ||||| || || || || || || ||||| ||||| ||| ||
Sbjct 166846 GCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTT 166788
Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|| || || | || ||| | || ||||| || || ||||||||||| |||| |||
Sbjct 166787 GACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGTAACTGT 166728
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| || ||||| || || || || || | || || || | ||| || || || |||
Sbjct 167640 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 167581
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | |||||| || || || || || || |||||||| ||||||| || |||||
Sbjct 167580 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 167521
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || || || || | |||||||||||| || || | || || |||
Sbjct 167520 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACA 167461
Query 104549 AATATCTGCAT 104559
||||| |||||
Sbjct 167460 AATATTTGCAT 167450
>seq30
Length=167504
Score = 96.9 bits (106), Expect = 8e-15
Identities = 119/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| |
Sbjct 89674 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 89616
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || || | |||||||| ||||| || || || || ||||| | ||||||||||| |
Sbjct 89615 AGAGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGG 89556
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTC 104490
| ||||| || || ||||| ||||| | ||| ||||| ||
Sbjct 89555 GAATTCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTC 89516
>seq476
Length=308794
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| ||||| || ||||| ||||| || ||||| ||| | ||||| |||
Sbjct 12520 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCCATCTTCTGG 12461
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | ||
Sbjct 12460 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAT 12401
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||| | ||| ||||||||| ||
Sbjct 12400 GAGGGTCTCCACACCGACTTCGCATG 12375
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151390964844832
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