Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq498 127 3e-25 seq333 113 7e-21 >seq498 Length=236490 Score = 127 bits (140), Expect = 3e-25 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 1364 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 1306 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| || ||||||||||| ||||| ||| |||| | || |||||||||||| Sbjct 1305 CAGACGTCTCGCACGTCGTGGTGGTGTCAAACGTATCTCAGCCATGATCTATGAAGAGAC 1246 Query 16552 TCGTGATGTTTTGAAGA 16568 |||| |||| | |||| Sbjct 1245 CCGTGGTGTTCTCAAGA 1229 >seq333 Length=961378 Score = 113 bits (124), Expect = 7e-21 Identities = 86/99 (87%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||||| |||| |||||| || ||||||||||| ||||||||||| ||||| Sbjct 54673 GCCAAGCGTCATCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCTGCTAT 54731 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| || ||||||||||| ||||||||| |||| Sbjct 54732 CAGACGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 54770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074739189272