Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq104 277 2e-69 seq476 129 7e-25 >seq104 Length=83277 Score = 277 bits (306), Expect = 2e-69 Identities = 1324/2068 (64%), Gaps = 55/2068 (3%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| || || || || || || | | ||||| |||||||||||||| || || ||| Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 62113 || || |||| || ||||||||||| || | || || | || || | || Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864 Query 62114 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 ||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | | Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62233 ||| || ||||| || ||||||| || || |||| ||| ||||| |||||| Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984 Query 62234 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62290 |||| | || || || |||||||| || || || || | ||||| || | ||| Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044 Query 62291 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62350 ||| | | | || | | | |||| || || || || || || || ||||| Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104 Query 62351 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62410 || | || | |||| || || || |||||| || || | |||| || || Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164 Query 62411 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470 | ||| ||| || ||||| |||||||| || || | ||||| || | | || Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224 Query 62471 GTATGTTCTG-ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACN 62528 || ||| | | | | | || || | |||||| ||||||||| | ||| ||| Sbjct 47225 GT--GTTGAGCAATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGTAGGTGTAACA 47282 Query 62529 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 62588 ||| || || || ||| || ||| ||||| || ||| Sbjct 47283 CCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATAT 47342 Query 62589 GGTCCTTCCTTCTCAGCTAGTTC-AC--AACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || || | | | || | || || || | | || ||| ||| ||||||||| Sbjct 47343 GGACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTT 47399 Query 62646 TCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 |||||||| | | || || | |||| ||||| | || || ||| | ||||| Sbjct 47400 TCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAG 47457 Query 62705 AATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 | || || || || | ||||||||||| | | | |||||||| || | ||| | Sbjct 47458 CCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-G 47516 Query 62764 AGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 |||| || || |||| || ||||| || | ||| ||||| ||||| | || || Sbjct 47517 CTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTG 47576 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTATTAC 62878 || | ||||| | || || | || || | || ||| | | || | ||| | Sbjct 47577 ACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCA 47636 Query 62879 AAACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 | | ||||| || |||| ||||||| ||| ||||| || ||||||| | | | || Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACA 47695 Query 62937 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | | ||||||||||| | || | ||| || || | ||| | ||| || Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||||||| ||| || |||||||| ||||| ||||| || | || || ||| |||||| Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63115 || | || | | ||| | | | || || || | ||| | |||| | || Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGAC-CCTTGC-CT 47870 Query 63116 T-----TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | |||||| |||||| ||||||||||| || | || | | |||||||| Sbjct 47871 TCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCA 47930 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230 ||||| || | || |||||||| | ||| || || | | || || ||||| ||| Sbjct 47931 GGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAG 47990 Query 63231 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63290 ||||| || ||||| ||||| || ||||| | || | | ||||| ||||| Sbjct 47991 AGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGG 48050 Query 63291 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63350 |||||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| Sbjct 48051 TTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCG 48110 Query 63351 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | | | ||||| || ||||| || || ||||| | |||||||||||||| || ||||| Sbjct 48111 AAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170 Query 63411 CTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTG 63470 | | ||| |||| ||| ||||| || | || || ||||| | ||||| || | Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230 Query 63471 GCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63528 ||||| || | | |||| ||||| || || || || | || || || | || | Sbjct 48231 GCACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCAC 48288 Query 63529 ATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588 | ||| || ||||| |||||||| || ||||| || || |||||| | || || | Sbjct 48289 AAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGC 48348 Query 63589 AGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || || | || ||| | | || || || || | || || || ||||| || Sbjct 48349 AGGATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTG 48407 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 || |||| || | | ||||| ||||| || || | || |||||| || Sbjct 48408 AAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 ||||| || || || ||||| | ||| || || || | |||| ||||||| | | Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGG 48527 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTC 63825 | | || ||| || | || || ||||| || || | ||| ||||| || | Sbjct 48528 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCAC 48585 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC-CATGGTG 63884 | ||||| | |||| | |||||||| | ||| || || |||| ||| ||| | Sbjct 48586 GGTCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT- 48644 Query 63885 ATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATC 63943 | ||| || || || || | || ||| |||| || ||||||| | |||| || Sbjct 48645 -TGTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTC 48703 Query 63944 CTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTC 64002 || || | | | ||| | || || |||| |||||| ||||| || || || |||| Sbjct 48704 GGAGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTC 48762 Query 64003 TGGCGGCTAGAATGGCATAATCCGGATG 64030 | || || || ||||||||||| || || Sbjct 48763 TTGCTGCGAGGATGGCATAATCGGGGTG 48790 >seq476 Length=308794 Score = 129 bits (142), Expect = 7e-25 Identities = 295/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||| | ||||| || ||||| || ||||| |||||| | | || || || Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| || || || || |||| ||| || |||| || | | || | ||||| Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200 Query 33133 AAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 33189 | | ||| |||||||| || || ||| ||||||| | ||||| || | | Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260 Query 33190 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 || | ||||||||| | || | || ||||| ||||| || || || || || Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320 Query 33250 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 | | || | | | | || || ||||| || || || | | |||||| Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || ||| ||| |||||||| || | || | |||||||| || || || || | | Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || ||||||||||| || | ||| || ||||| ||||| || ||| |||||||| || Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500 Query 33430 TCTACTGCAGCAAAGGCAATAAG 33452 || || ||||||||||||| ||| Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943275432640