Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq104 242 1e-58 seq57 111 4e-19 seq476 95.1 3e-14 >seq104 Length=83277 Score = 242 bits (268), Expect = 1e-58 Identities = 1053/1638 (64%), Gaps = 48/1638 (3%) Strand=Plus/Minus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 |||||| || || |||||| | ||||| |||||| | || ||||| || |||| | || Sbjct 48509 TGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATCGA 48450 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCA 363564 || || || || || || || ||| | || | | || ||||| |||||| | || Sbjct 48449 GGCTGCCATCGAGACCTACAA-CTTG-ATGTCCAGCAAATACTTCACCCACGCCTCCCCC 48392 Query 363565 ACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 ||| | | | ||||| || | | |||| | || || ||||| ||| | | ||| Sbjct 48391 ACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 48332 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 ||||| || ||| || ||||||| |||||| | || | |||||| | ||||| ||| Sbjct 48331 AAGGAGGACAGCATTGATGGTATCTACGACACATTGAAAATTTGTGCCATGATTTCAAAG 48272 Query 363685 AATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGC 363744 || || || || || ||| | | |||| | ||||| | ||| ||| Sbjct 48271 AACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGACGGGTGCTTATATTGCG 48212 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || ||| ||| |||| || || | |||||||||||||| || || |||| || || Sbjct 48211 GGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACACCGCT 48152 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || || || || ||||| ||||| || || || || || || || ||||| Sbjct 48151 AGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTCGCCATCTACCTTGAGCCA 48092 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || || ||| |||| ||||| ||||| ||||| || ||| ||||| ||||| | Sbjct 48091 TGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAGGTT 48032 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| |||||||| ||||| || || ||| | | || | || |||||||| || || Sbjct 48031 CGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGCGTGTTGA- 47973 Query 363985 GCAGGTAAGA------ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 |||| | ||| || | | ||||| |||| ||||| || | |||| Sbjct 47972 -----AAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCGAC 47918 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 || | |||||||| | | ||| | || || || || || || || || |||| ||| Sbjct 47917 GTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTCGC 47858 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 |||| || || || ||||| |||| | ||| | || | |||| |||||| ||| Sbjct 47857 AAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCAGACTGAGACCGGA 47798 Query 364159 ACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 | ||||| | ||| | ||||| ||| | |||||||| ||| ||||| || | || || Sbjct 47797 A-ACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAATCTCGG 47739 Query 364218 TACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 ||| | || | || |||| | || || |||||| | || ||| || || || ||| Sbjct 47738 TACCA-TCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTACTGTGCACCAGATGAGG 47680 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTA 364330 || || || || | || ||| | || || || | | ||| | |||| || | Sbjct 47679 TCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGACGAGAAGACTGCCA 47620 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG-CA--ATCTCG-AC 364386 ||| |||| ||| | || | || || || || | || | | || | || | | Sbjct 47619 CTTATGACTTCCAAAAGCTCCACGAGGT---CTGCCAAG-TAGTCGTCAAGAACTTGAAT 47564 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCA 364445 ||| ||||||| || ||||| ||| ||||||| || || | | ||| | ||||| Sbjct 47563 AAGATTATCGATGTCAACTATTACCCAGTTCCTGAGGCAAGAAAGAGC-AATTTCCGTCA 47505 Query 364446 TCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGC 364505 | || |||| ||| ||||| || || || ||||| | || || || | | Sbjct 47504 CAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCGCCTTCC 47445 Query 364506 ATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGC 364565 || || || || || || || || | | ||||| ||||| || || || Sbjct 47444 TTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTACCACGC 47385 Query 364566 CGCAATGACTGCTT-CGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGG 364624 || ||||||||| |||| || |||||||||| | || || || || | | Sbjct 47384 TGCTTTGACTGCTTCCGTG-GAGTTGGCAAAAATTCATGGTCCATATGAGACATACCAAG 47326 Query 364625 GGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCC 364684 | || ||| || |||| | |||| | ||| | ||| ||| || || | | | Sbjct 47325 GCTCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGGGTGTTACACCTACCGATC 47266 Query 364685 GATGGAACTGGGATACGCTACGTTCCAAC--GTTAAGAAGCATGGTACTCGCAAC---TC 364739 ||| | |||| || ||| | |||| || | || || | |||||| | Sbjct 47265 TTTGGGATTGGGCTA-GCT-TGAAGCAACAGATTGCTCAACACGGCATCCGCAACAGTTT 47208 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 ||||| || || ||||| || || ||| ||||| || || ||||||||| Sbjct 47207 GCTCGT---CGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAACGAGTG 47151 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||||| || | ||| ||| | ||||| || || || ||| | ||||| || | ||| Sbjct 47150 CTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTTCCAGGT 47091 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || | || | ||||||||| || || || ||| || | |||||| Sbjct 47090 TGTCAACCCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGATAACATGAA 47031 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 |||| |||||| || | ||| || | || || ||||| |||||| ||| | Sbjct 47030 GAACCGTATCATTGCTGACGGTGGATCAATCCAAAATGTTCCAAATATTCCAGCTGATAT 46971 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 ||| || ||||||| ||||| ||||| || || || || || | | ||||| || Sbjct 46970 CAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCATCGTCCAGATGGCTGC 46911 Query 365040 CGATCGCGGTGCTTTTAT 365057 ||| || ||||| || || Sbjct 46910 CGACCGTGGTGCATTCAT 46893 >seq57 Length=701840 Score = 111 bits (122), Expect = 4e-19 Identities = 279/419 (67%), Gaps = 45/419 (11%) Strand=Plus/Minus Query 111421 TAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACA 111480 ||||||| ||||| |||||||||||||| || | || ||| || || ||| | || Sbjct 623099 TAAAAATCTGGGACGGAAATGGATCACGCGAATACCTCGATAGCGTAGGCCTTTCCCACC 623040 Query 111481 ACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACT 111540 || || ||| ||||| |||||||| || || || ||||||||||| ||||| || || Sbjct 623039 GCGCAGTAGGAGATCTTGGACCAGTCTATGGCTTCCAATGGCGCCATTTTGGGGCTGA-- 622982 Query 111541 ACAAAACCATGC----ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC 111596 | | |||| ||| | ||| || || ||||| ||||| || || | || Sbjct 622981 ATATGTTGATGCCGCAACGGATTATACGA-GCA-AGGGAGTCGATCAGTTGCAAGAGGTT 622924 Query 111597 ATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 || ||| | | | ||| || || | ||| || |||||| ||||||| ||||| || Sbjct 622923 ATCGATAAGTTGAGGAATAATCCTTATGATCGACGGATTATTTTGAGTGCGTGGAATCCG 622864 Query 111657 AATGCATTGGAAAAAATGGCACTTCCACCATGTCATCT-TATGTGCCAGTTTTATGT--- 111712 | | ||| || ||||| || || || |||||| | | || | ||||||||||| Sbjct 622863 AGGGATTTGAAACTTATGGCGCTGCCGCCTTGTCATATGTTTGCG-CAGTTTTATGTTTC 622805 Query 111713 -------------ACAC--GACGGGAT--------------GCTTTCA-TGCCAAATGTA 111742 |||| || || || | || || || ||| | || Sbjct 622804 GTATCCACCAACCACACCAGATGGAATGAAGGGCAAGGGGAGATTGCATTGTCAACTTTA 622745 Query 111743 TCAG-CGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTA 111800 |||| || ||| |||||| || ||||||||||||||||||||||||||||| || ||| Sbjct 622744 TCAGAGGAGCTG-TGATATGGGACTTGGTGTTCCGTTTAATATTGCAAGTTATGCGCTA 622687 >seq476 Length=308794 Score = 95.1 bits (104), Expect = 3e-14 Identities = 341/529 (64%), Gaps = 12/529 (2%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488 || ||||| || || |||||||| | |||||| | ||| ||| | | || || Sbjct 12589 ATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATCTACCTTTGCT 12530 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| |||| ||||||| ||||| || || ||||| ||| | || | Sbjct 12529 CAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTTCGCCTCC 12470 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||| | || || |||| | ||| | ||||| || || || || ||||| || Sbjct 12469 ATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATC 12410 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATT 22668 ||| ||||||||||| || ||||| || || || | || | || ||| | | Sbjct 12409 TCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCT-TC--TCTCACTTGAAG 12353 Query 22669 CATAAACTTCCA---TATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAA 22725 ||| | ||| | | | | || | | | || || | || ||||| |||| Sbjct 12352 CAT---CGCCCAAGCAAGGCAGCAGTCCAGGCCGTCATCACCGAGGCTGTTGAGATTGAG 12296 Query 22726 CGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATG 22785 | || | |||||| | || ||| | || || || ||| | | ||| Sbjct 12295 CAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGGGCATGAACGCCAACTTGATG 12236 Query 22786 AGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCAT 22845 | ||| ||| | || || || |||||||| | |||| ||||| ||| ||| | Sbjct 12235 AAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAATGAGAAGGTT 12176 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 || || || | || ||||| || | ||||| || || |||| ||||||||| || Sbjct 12175 TACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGGAAAGACTAAC 12116 Query 22906 TTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 |||||||| || | |||| ||| |||||||| || ||||| |||| || Sbjct 12115 TTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGGCTGGTGTCATGGCTG 12067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345183594128