Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq192 140 2e-28
seq18 104 2e-17
>seq192
Length=9579
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7237 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7296
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7297 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7331
>seq18
Length=186891
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167
|||||| || |||||||||||||||||||| |||||||| | ||| | || ||
Sbjct 167659 CACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTC 167600
Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227
||||| || ||||| || || | || ||||| || | || | || || || |||
Sbjct 167599 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 167540
Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287
|| ||| ||| ||||| | | || || | |||||||| ||||||||||| ||
Sbjct 167539 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 167480
Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| || || || ||||| |||||
Sbjct 167479 GCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||||||||| ||| ||||||||| |||||||| || |
Sbjct 167450 TACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGG 167391
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| || | || || ||||| || || || || || || || ||||| || | |
Sbjct 167390 ACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTG 167331
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| ||| || ||| || || | || ||||||| | |||||
Sbjct 167330 GGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAA 167271
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || || | || || ||||| || |||||
Sbjct 167270 CCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 167222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945142586824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |