Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq104 255 7e-63
seq476 120 4e-22
>seq104
Length=83277
Score = 255 bits (282), Expect = 7e-63
Identities = 1316/2066 (64%), Gaps = 51/2066 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| || || || || || || | | ||||| |||||||||||||| || || |||
Sbjct 46746 GTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 46805
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 61968
|| || |||| || ||||||||||| || | || || | || || | ||
Sbjct 46806 CCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCCTTC-AT 46864
Query 61969 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62028
||||| ||||| |||||| |||||| ||||| || || | ||| |||||||| | |
Sbjct 46865 GTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATCTGGAC 46924
Query 62029 AATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 62088
|| || ||||| || ||||||| || || |||| ||| ||||| ||||||
Sbjct 46925 GATGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAAT 46984
Query 62089 GTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 62145
|||| | || || || |||||||| || || || || | ||||| || | |||
Sbjct 46985 ATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGA 47044
Query 62146 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 62205
||| | | | || | | | |||| || || || || || || || |||||
Sbjct 47045 CCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGAACTCTCC 47104
Query 62206 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 62265
|| | || | |||| || || || |||||| || || | |||| || ||
Sbjct 47105 AGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACC 47164
Query 62266 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| ||| ||| || ||||| |||||||| || || | ||||| || | | ||
Sbjct 47165 AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCC 47224
Query 62326 GTATGTTCTG-ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGACGGTACAACN 62383
|| ||| | | | | | || || | |||||| ||||||||| | ||| |||
Sbjct 47225 GT--GTTGAGCAATCTGTTGCTTCAAGCTAGCCCAATCCCAAAGATCGGTAGGTGTAACA 47282
Query 62384 NNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTAT 62443
||| || || || ||| || ||| ||||| || |||
Sbjct 47283 CCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATAT 47342
Query 62444 GGTCCTTCCTTCTCAGCTAGTTC-AC--AACTCGCCTCTAATGCACCGTAATAAATGGTT 62500
|| || | | | || | || || || | | || ||| ||| |||||||||
Sbjct 47343 GGACCATGAATTTTTGCCAACTCCACGGAAGCAGTC---AAAGCAGCGTGGTAAATGGTT 47399
Query 62501 TCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559
|||||||| | | || || | |||| ||||| | || || ||| | |||||
Sbjct 47400 TCGAAGATTTGGATGTTAAGGTGCTTG-GCTTCTGGAGACTCGAAAGGA-AGGCGAAGAG 47457
Query 62560 AATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
| || || || || | ||||||||||| | | | |||||||| || | ||| |
Sbjct 47458 CCAAGAAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAAATT-G 47516
Query 62619 AGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|||| || || |||| || ||||| || | ||| ||||| ||||| | || ||
Sbjct 47517 CTCTTTCTTGCCTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTG 47576
Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--CATCTATTAC 62733
|| | ||||| | || || | || || | || ||| | | || | ||| |
Sbjct 47577 ACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCA 47636
Query 62734 AAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
| | ||||| | |||| ||||||| ||| ||||| || ||||||| | | | ||
Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG-TGCACA 47695
Query 62792 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850
|| | | ||||||||||| | || | |||||| || | ||| | ||| ||
Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755
Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910
||||||| ||| || |||||||| ||||| ||||| || | || || ||| ||||||
Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TTC 62967
|| | || | | ||| | | | || || || | ||| | ||| |||
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTC---TTGCGACCCTTGCCTTC 47872
Query 62968 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGG 63027
|||||| |||||| ||||||||||| || | || | | ||| ||||||
Sbjct 47873 AGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGG 47932
Query 63028 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63087
||| || | || |||||||| | ||| || || | | || || ||||| |||||
Sbjct 47933 ACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAG 47992
Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147
||| || ||||| ||||| || ||||| | || | | ||||| ||||| ||
Sbjct 47993 ATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 48052
Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207
|||| ||||| |||||| | | || ||| | ||||| || || | ||| ||||| |
Sbjct 48053 CTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAA 48112
Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267
| | ||||| || ||||| || || ||||| | |||||||||||||| || ||||||
Sbjct 48113 AGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCG 48172
Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327
| ||| |||| ||| || ||||| | || || || || | ||||| || | ||
Sbjct 48173 AAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGC 48232
Query 63328 ACGAATATTACTA--ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385
||| || | | |||| ||||| || || || || | || || || | || ||
Sbjct 48233 ACGGATTCTGTGAACATTG--AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAA 48290
Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445
||| || || || ||||| || || || || || ||| |||||| | || || |||
Sbjct 48291 ATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAG 48350
Query 63446 CTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504
|| | || ||| | | || || || || | || || || ||||| || ||
Sbjct 48351 GATGAAAGTT-GTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAA 48409
Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564
|||| || | | ||||| ||||| || || | || |||||| || ||
Sbjct 48410 GTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGAT 48469
Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624
||| || || || ||||| | ||| || || || | |||| ||||||| | |
Sbjct 48470 TCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGCG 48529
Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63682
| | || ||| || | || || ||||| || || | ||| ||||| || ||
Sbjct 48530 GAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAA--TCACGG 48587
Query 63683 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-CATGGTAAT 63741
||||| | |||| | |||||||| | ||| || || |||| ||| ||| | |
Sbjct 48588 TCGTAGACAATAGCGGAGTTGAGCTCGGCCTCATGCTTCATAACACAATCGTATGTT--T 48645
Query 63742 ACTTG-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCT 63800
||| || || || | | || ||| |||| |||||||||| | |||| ||
Sbjct 48646 GTTTGCTGATCATGGGCGACAATCTCTTGTTTCTAGGGTTGACATAGTGGTATAATTCGG 48705
Query 63801 CCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859
|| || | | | ||| | || || |||| ||||| ||||| || || || |||||
Sbjct 48706 AGATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGATTCGAAACTGCAATTCTT 48764
Query 63860 GCGGCTAGAATGGCATAATCCGGATG 63885
|| || || ||||||||||| || ||
Sbjct 48765 GCTGCGAGGATGGCATAATCGGGGTG 48790
>seq476
Length=308794
Score = 120 bits (132), Expect = 4e-22
Identities = 293/443 (66%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429
|||||||| ||| | ||||| || ||||| || ||||| || ||| | | || || ||
Sbjct 12084 TTTTGGTAATCAGCAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTC 12143
Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489
||||| || |||||||| |||| ||| || |||| || | | || | |||||
Sbjct 12144 TCCATAAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 12200
Query 32490 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 32546
| | ||| ||||| || || || ||| ||||||| | ||||| || | |
Sbjct 12201 AGGAGACGATCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGA 12260
Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606
|| | ||||||||| | || | || ||||| ||||| || || || || ||
Sbjct 12261 AGAGCACAAGGAAGAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATG 12320
Query 32607 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666
| | |||| | | | || || ||| | || || || | | ||||||
Sbjct 12321 ACGGCCTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAGAAGGCATGCG 12380
Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726
|| ||| ||| |||||||| || | || || |||||||| || || || || | |
Sbjct 12381 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 12440
Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786
|| ||||||||||| || | ||| || ||||| || || || ||| ||||| || ||
Sbjct 12441 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCC 12500
Query 32787 TCTACTGCCGCAAAGGCAATAAG 32809
|| || || |||||||||| |||
Sbjct 12501 TCAACAGCAGCAAAGGCAACAAG 12523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633628008118400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |