Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq476 95.1 1e-14 >seq476 Length=308794 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || |||||||| || | ||| || || || || |||||||| ||| ||| || | Sbjct 12374 GCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAG 12433 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || || ||||| | ||| || || || || ||| ||| || || Sbjct 12434 ACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAA 12493 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || ||||| || |||| ||||| ||||| | | ||| || | Sbjct 12494 GATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAG----ATTCCTTGT 12549 Query 93271 ----GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 ||||||| | ||||||||||||||| ||||| || ||||| Sbjct 12550 CTTGGATCCATCGGACAGCCCAATCGGCTTTCTTCTTGATGCAAGG 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556857291776960