Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18 118 9e-22 seq30 96.9 3e-15 >seq18 Length=186891 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || || || ||||| || || |||| || || || ||| | | ||||||| | ||| Sbjct 167006 GTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGAC 167065 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | |||| || || |||||||||||||| || ||||| || ||||||||||| || Sbjct 167066 AACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATC 167125 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| || || || | ||||| ||||||| | || || ||||||||||| ||||| Sbjct 167126 TTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAG 167185 Query 22411 TCCACCATACATTTAGTT 22428 || || | || || ||| Sbjct 167186 TCTACTCTCCACTTGGTT 167203 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || || || | || | ||||| || | | Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || || ||||||||||||||||| || ||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| || || |||||| ||| || || |||||||||| Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 167630 ATTCAAAAGGA 167640 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || |||| ||||| ||||| | |||| || | ||| | |||| Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGAGC 166793 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || ||||| |||||| | || ||||| ||||| Sbjct 166794 AAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAAG 166853 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||||| |||| ||||||||||| || || || ||||| Sbjct 166854 CAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCAC 166906 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || |||| | || || ||| | | Sbjct 167222 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCA 167281 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || ||||| || ||||||||||| ||||| || ||| Sbjct 167282 GATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 167341 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| || || |||||| ||| ||| | ||||| ||||| Sbjct 167342 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 167401 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || ||||| | ||||| || Sbjct 167402 ATCCAAAAGGAGTCCACACTTCATTTGGT 167430 >seq30 Length=167504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || ||||| || || || ||||||||||| ||||| || ||||||||||| || Sbjct 89516 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTA 89575 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || |||||||| || | || || ||| ||| |||| || |||||||| || || Sbjct 89576 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAG 89635 Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||| | ||| | || || || | || ||||| Sbjct 89636 GAGTCGACCCTTCATCTCGTCTTACGTCTACGTGGAGG 89673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725421820760