Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq18 118 9e-22
seq30 96.9 3e-15
>seq18
Length=186891
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || || || ||||| || || |||| || || || ||| | | ||||||| | |||
Sbjct 167006 GTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCGAC 167065
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| |||| || || |||||||||||||| || ||||| || ||||||||||| ||
Sbjct 167066 AACGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTCATC 167125
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
||||| || || || | ||||| ||||||| | || || ||||||||||| |||||
Sbjct 167126 TTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAAGAG 167185
Query 22411 TCCACCATACATTTAGTT 22428
|| || | || || |||
Sbjct 167186 TCTACTCTCCACTTGGTT 167203
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| ||||| || ||||| || || || || | || | ||||| || | |
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| ||| || || || ||||||||||||||||| || |||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| || || |||||| ||| || || ||||||||||
Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629
Query 22399 ATTCAAAAAGA 22409
|||||||| ||
Sbjct 167630 ATTCAAAAGGA 167640
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|||||||| || |||| ||||| ||||| | |||| || | ||| | ||||
Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACGTCAAGAGC 166793
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || ||||| |||||| | || ||||| |||||
Sbjct 166794 AAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCAAG 166853
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| ||||| |||| ||||||||||| || || || |||||
Sbjct 166854 CAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCAC 166906
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | || || || || |||| | || || ||| | |
Sbjct 167222 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTCA 167281
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | ||| | | || || ||||| || ||||||||||| ||||| || |||
Sbjct 167282 GATACTATCGACAACGTAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAA 167341
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| || || |||||| ||| ||| | ||||| |||||
Sbjct 167342 CAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTACAAT 167401
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| ||||| || ||||| | ||||| ||
Sbjct 167402 ATCCAAAAGGAGTCCACACTTCATTTGGT 167430
>seq30
Length=167504
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347
||| || ||||| || || || ||||||||||| ||||| || ||||||||||| ||
Sbjct 89516 GACAATGTCAAATCCAAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTA 89575
Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407
|| || |||||||| || | || || ||| ||| |||| || |||||||| || ||
Sbjct 89576 ATCTTCGCCGGCAAGCAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAG 89635
Query 22408 GAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || ||| | ||| | || || || | || |||||
Sbjct 89636 GAGTCGACCCTTCATCTCGTCTTACGTCTACGTGGAGG 89673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419725421820760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |