Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq18 181 2e-40 seq46 87.8 3e-12 >seq18 Length=186891 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || |||||||| |||||||| || || ||||| Sbjct 167448 CCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGAC 167389 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || || ||||| || ||||| ||||||| |||||||| ||||| Sbjct 167388 AAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGG 167329 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| ||| ||||| || |||| ||||| || Sbjct 167328 ATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACC 167269 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| ||||| || || ||||||||||| || |||||| Sbjct 167268 TCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221 Score = 150 bits (166), Expect = 3e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || || |||||||| || ||||| || || | Sbjct 167222 TTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCG 167163 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || | ||||| || || || ||||| | ||||||||| |||| Sbjct 167162 AAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTG 167103 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | ||||| ||||||||||| ||||| | ||||||| |||||||| || ||| ||||| Sbjct 167102 GGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATC-GCTCGATTCG 167044 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || || | |||||| || || || || | ||||||||||| Sbjct 167043 ACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| ||||||||||| || |||||||| ||||| ||| Sbjct 166936 CCGCCACGAAGACGGAGGACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAG 166877 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || | | ||| || || || ||| Sbjct 166876 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGA 166817 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||| ||||| ||||| | || || || Sbjct 166816 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACC 166757 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | |||||| || || || || Sbjct 166756 TCAAGGGTGATAGTCTTACCGGT 166734 >seq46 Length=702932 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || || || || | ||||| || | ||||| || ||||| || Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||||||| |||||||| || |||||||| || ||||| | ||| || ||| Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729 Query 68394 ATGGTGTC 68401 ||||| || Sbjct 219730 ATGGTATC 219737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921616593778880