Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq18 105 6e-18
>seq18
Length=186891
Score = 105 bits (116), Expect = 6e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | ||| || || | ||||| ||||| ||||||||||| ||
Sbjct 167223 ATTCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCC 167164
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || |||||||| |||||||| |||||||||| |||||||||||
Sbjct 167163 GAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGT 167104
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || ||||| ||||| || | | || | ||| ||| | ||||||
Sbjct 167103 GGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCG 167044
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360
|| || | ||| | || ||||||||||
Sbjct 167043 ACCTCGAGGGTGATAGTCTTGCCGGTCA 167016
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
|| |||||||||||||||||||| | ||||| ||| || | ||| || || ||| |
Sbjct 167640 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 167581
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | ||||||||||| || ||||| || || || || |||||| || | |
Sbjct 167580 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 167521
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| ||||| | || || || |||| || | || ||||| |||| ||| || |||
Sbjct 167520 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACA 167461
Query 114372 AAAATCTGCAT 114382
|| || |||||
Sbjct 167460 AATATTTGCAT 167450
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || || || ||||| || ||||| |||
Sbjct 167451 ATACCACCACGAAGACGAAGGACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCG 167392
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| || | ||| || || ||| | ||||| ||||||||||| ||
Sbjct 167391 GACAAGGTTCGGCCATCCTCCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGT 167332
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || || || |||||| |||| | || | || || | |||||
Sbjct 167331 GGGATACCCTCCTTATCCTGAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCA 167272
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || || ||||| || || || || |||||
Sbjct 167271 ACCTCCAAGGTGATGGTCTTTCCAGTAAGAGTCTTGACGAAGATTTGCAT 167222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420131819324448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |