Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq104 174 3e-38 seq476 172 1e-37 >seq104 Length=83277 Score = 174 bits (192), Expect = 3e-38 Identities = 512/784 (65%), Gaps = 20/784 (3%) Strand=Plus/Plus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| ||||||||| ||||| | ||| || |||||| || || | || || || Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 ||| |||||| || |||||||| |||||||| || |||||||| ||| || Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 | |||| || ||| || | || |||| || ||||| ||||||| || | Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGA 47875 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 |||||| |||| |||||||||||| || |||| ||| | | || || || Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935 Query 244963 CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022 | |||||||| | |||| || | | | || | || ||||||||| || Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATC 47995 Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082 ||||||||||| || | |||||| || | || | ||| ||| || |||||| Sbjct 47996 TGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 48055 Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142 | || || | || || || || || ||||||| ||||| | ||||| |||| || Sbjct 48056 TCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGC 48115 Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGC 245198 || || |||||||| || || || | || | | || |||| |||||| | | Sbjct 48116 ACCAGGACGCTTGTTACCACCTTG----ATCAACATATCTAGCGGTGTTGTTGAAAACTC 48171 Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGC 245258 | || | || || || ||||| |||| ||||| || ||| || || || ||| | Sbjct 48172 GAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCG 48231 Query 245259 CCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314 | | || | ||| || |||| || | || || |||| ||| || || | ||| Sbjct 48232 CAC---GGATTCTG-TGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCA 48287 Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374 || | || | ||||| || || || ||||||||| |||||||| || || ||| Sbjct 48288 CAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAG 48347 Query 245375 CAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT--GAACAGAGTGGGGCTGGCGTGGG 245432 ||||| || || || | || | | || || || | ||| || |||||| |||||||| Sbjct 48348 CAGGATGAAAGTTGTGCCT--GTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGG 48405 Query 245433 TAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGT 245492 | ||||| ||| || | || ||| |||| || ||| ||||| | ||||||| Sbjct 48406 TGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGT 48465 Query 245493 GGAT 245496 |||| Sbjct 48466 GGAT 48469 >seq476 Length=308794 Score = 172 bits (190), Expect = 1e-37 Identities = 361/519 (70%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAAC 42691 || |||||||||||||| || || ||||| || |||||| | || | | | | || Sbjct 12595 CCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAATCTAC 12537 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || |||||| | || || ||||| ||||||||| ||| | || Sbjct 12536 CTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTT 12477 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 |||||||||||||||| | ||| || || || ||| | || || |||||||| |||| Sbjct 12476 CGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 12418 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | | ||| | | || ||||| || || | ||||| || ||||| || ||||| | Sbjct 12417 AGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---TC 12361 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 || | | ||| |||| | |||| ||| |||| |||| ||||||| ||||| || || Sbjct 12360 ACTTGAAGCA-TCGCCCAAGCAAGGCAGC-AGTCCAGGCCGTCATCACCGAGGCTGTTGA 12303 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987 ||| ||| | |||||| | || || | || || ||| | || | ||||||||| | Sbjct 12302 GATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTG-CTCTTCTGGGCATGAACGCCA 12244 Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045 || | ||| |||| ||||| ||| ||||||||| | |||||| | | || | Sbjct 12243 ACTTGATGAAGCAA-TACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAAT 12185 Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 || | | ||||| | ||| ||||||||||||||||||||||| | | || Sbjct 12184 GAGAAG-GTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGG 12126 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||| ||||| ||||||||||| || || || ||||| Sbjct 12125 AAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCA 12087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333250663040