Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq104 174 3e-38
seq476 172 1e-37
>seq104
Length=83277
Score = 174 bits (192), Expect = 3e-38
Identities = 512/784 (65%), Gaps = 20/784 (3%)
Strand=Plus/Plus
Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782
||||| ||||||||| ||||| | ||| || |||||| || || | || || ||
Sbjct 47696 GTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTT 47755
Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842
||| |||||| || |||||||| |||||||| || |||||||| ||| ||
Sbjct 47756 ACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902
| |||| || ||| || | || |||| || ||||| ||||||| || |
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACCCTTGCCTTCAGA 47875
Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962
|||||| |||| |||||||||||| || |||| ||| | | || || ||
Sbjct 47876 CTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935
Query 244963 CGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022
| |||||||| | |||| || | | | || | || ||||||||| ||
Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATC 47995
Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082
||||||||||| || | |||||| || | || | ||| ||| || ||||||
Sbjct 47996 TGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 48055
Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142
| || || | || || || || || ||||||| ||||| | ||||| |||| ||
Sbjct 48056 TCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGC 48115
Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGC 245198
|| || |||||||| || || || | || | | || |||| |||||| | |
Sbjct 48116 ACCAGGACGCTTGTTACCACCTTG----ATCAACATATCTAGCGGTGTTGTTGAAAACTC 48171
Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGC 245258
| || | || || || ||||| |||| ||||| || ||| || || || ||| |
Sbjct 48172 GAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCG 48231
Query 245259 CCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCG 245314
| | || | ||| || |||| || | || || |||| ||| || || | |||
Sbjct 48232 CAC---GGATTCTG-TGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCA 48287
Query 245315 CAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAG 245374
|| | || | ||||| || || || ||||||||| |||||||| || || |||
Sbjct 48288 CAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAG 48347
Query 245375 CAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT--GAACAGAGTGGGGCTGGCGTGGG 245432
||||| || || || | || | | || || || | ||| || |||||| ||||||||
Sbjct 48348 CAGGATGAAAGTTGTGCCT--GTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGG 48405
Query 245433 TAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGT 245492
| ||||| ||| || | || ||| |||| || ||| ||||| | |||||||
Sbjct 48406 TGAAGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGT 48465
Query 245493 GGAT 245496
||||
Sbjct 48466 GGAT 48469
>seq476
Length=308794
Score = 172 bits (190), Expect = 1e-37
Identities = 361/519 (70%), Gaps = 17/519 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAAC 42691
|| |||||||||||||| || || ||||| || |||||| | || | | | | ||
Sbjct 12595 CCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCA-AGACAAGGAATCTAC 12537
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || |||||| | || || ||||| ||||||||| ||| | ||
Sbjct 12536 CTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCTCTTT 12477
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
|||||||||||||||| | ||| || || || ||| | || || |||||||| ||||
Sbjct 12476 CGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 12418
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| | ||| | | || ||||| || || | ||||| || ||||| || ||||| |
Sbjct 12417 AGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---TC 12361
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928
|| | | ||| |||| | |||| ||| |||| |||| ||||||| ||||| || ||
Sbjct 12360 ACTTGAAGCA-TCGCCCAAGCAAGGCAGC-AGTCCAGGCCGTCATCACCGAGGCTGTTGA 12303
Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACG 42987
||| ||| | |||||| | || || | || || ||| | || | ||||||||| |
Sbjct 12302 GATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTG-CTCTTCTGGGCATGAACGCCA 12244
Query 42988 ACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCT 43045
|| | ||| |||| ||||| ||| ||||||||| | |||||| | | || |
Sbjct 12243 ACTTGATGAAGCAA-TACATTGAGTTCGTCGCCGATCGTCTCCTCCTTTCTCTCGGCAAT 12185
Query 43046 CAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105
|| | | ||||| | ||| ||||||||||||||||||||||| | | ||
Sbjct 12184 GAGAAG-GTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCTCTCTTGCAGG 12126
Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||| ||||| ||||||||||| || || || |||||
Sbjct 12125 AAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCA 12087
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944333250663040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |