Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq476 102 2e-16 seq103 91.5 3e-13 >seq476 Length=308794 Score = 102 bits (112), Expect = 2e-16 Identities = 173/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 ||||||| || || ||||| | || | || ||| | ||| ||| |||| || | Sbjct 12321 TCATCACCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTC 12262 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 || | ||||||||| | | | ||| || ||||| || ||||| ||||| || | Sbjct 12261 TTCTGGGCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCC 12202 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 || | | || || ||||||| || ||||| ||||| || | |||||||||| Sbjct 12201 TCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGA 12142 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCC 243742 ||| || ||| ||| || |||||||||||||| |||||||| |||||| ||| Sbjct 12141 ACATCTCTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGTTGCTGATTACCAAAAGG 12082 Query 243743 CTGGTGTGATG 243753 ||||||| ||| Sbjct 12081 CTGGTGTCATG 12071 >seq103 Length=84595 Score = 91.5 bits (100), Expect = 3e-13 Identities = 165/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 330383 TGATAGAACGTCCCCATTTTACGCCATTGACAATCGACTCGAAATCATCGTTCAGGATGA 330442 ||| || |||||||| | | | | |||||||| || | ||| | ||||| || | || Sbjct 28704 TGACAGCTCGTCCCCACATCATGGCCTTGACAATGGAGTTGAAGTTATCGTCCATCAAGA 28645 Query 330443 CGATGTCGGCTGATTCCTTTGCAATATCTGTTCCAC---TCCCCATGGCACATCCAACGT 330499 ||| | | || |||||||||| ||||| ||| | ||||| | | ||||| | Sbjct 28644 TAATGGCAGATGCCTCCTTTGCAACCTCTGTACCAGCGATACCCATAGAGAAACCAACAT 28585 Query 330500 CTGCCTCCTTAAGAGCCGGAGCATCGTTAGCACCATCGCCACTCGATGCAACGACATGAC 330559 | || ||| ||||| ||||||||||| | |||||||||| | ||||| | || Sbjct 28584 CGGCGGTCTTCAGAGCAGGAGCATCGTTGGTACCATCGCCAGTAACAGCAACAGTCTCAC 28525 Query 330560 CAAGATCTTTCATGAGCTGAACAAGTTCATACTTATCCTCTGGGGATGAACGAGCAAGAA 330619 | || || || | | | |||||| | ||||||||| ||| || |||||||||| Sbjct 28524 CTAGTTCCTTTAGTCGTTTAACAAGAATACGCTTATCCTCAGGGCTAGATCGAGCAAGAA 28465 Query 330620 C 330620 | Sbjct 28464 C 28464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102872878152400