Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18 104 3e-17 >seq18 Length=186891 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | |||| ||||||||| |||||||| || | || || || | || || Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 167371 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||| || ||||| ||||||||||| ||||| | ||| | | |||||| ||| || Sbjct 167370 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCC-TG 167312 Query 42120 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | | ||| | | | || || ||||| || || | |||||||| || Sbjct 167311 AATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTT 167252 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || ||||| || |||||||||||| Sbjct 167251 TCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| |||| ||||||||||||||||| |||||||| || || || | || || Sbjct 167659 CACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTC 167600 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 | ||||| || ||||| || | |||||| ||||| | ||| | | |||||| ||| Sbjct 167599 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 167540 Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 ||| ||| |||| | | | ||||| || || || || | || || || || Sbjct 167539 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 167480 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| | ||||| ||||| |||||||| Sbjct 167479 GCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || ||||| ||||| || | || || || |||| || || ||||||||||| || Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| || || ||||| | ||| | || ||||||||| ||| || |||| ||| Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 167067 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||||||||||| || |||| ||||| || ||||| || | ||||| | Sbjct 167066 TGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTCTTGA 167007 Query 42196 C 42196 | Sbjct 167006 C 167006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543209377759360