Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq18 93.3 4e-14
seq30 82.4 8e-11
>seq18
Length=186891
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| ||||||||||||||||| || || || | || || | ||||||||||| ||
Sbjct 167640 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 167581
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| | ||||| ||||| || ||||| || || || || || || ||| ||| |||
Sbjct 167580 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 167521
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | ||| || | || ||||| | || | |||||||| |||||||| || ||
Sbjct 167520 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACA 167461
Query 64433 AAAATTTGCAT 64443
|| ||||||||
Sbjct 167460 AATATTTGCAT 167450
Score = 89.7 bits (98), Expect = 5e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| ||||||||||| || | | |||||| |||| ||||| ||||| ||
Sbjct 167190 GTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCA 167131
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||| || || ||||| || || || || || || ||||| || || |||
Sbjct 167130 GCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 167071
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| || | ||||| | | || || || | || | |||||||||||||| ||
Sbjct 167070 ACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 167011
Query 64427 TTTACGA 64433
|| ||||
Sbjct 167010 TTGACGA 167004
>seq30
Length=167504
Score = 82.4 bits (90), Expect = 8e-11
Identities = 97/130 (75%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289
|||| || ||||||| ||||| || || || |||||||| || | || ||| || |||
Sbjct 89659 TAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGT 89601
Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349
|||| || ||||||||||| | || || || || || || || |||||||| || || |
Sbjct 89600 CTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGT 89541
Query 64350 CTTGTATTTT 64359
| || || ||
Sbjct 89540 CCTGGATCTT 89531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499641652237760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |