Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 4e-14 seq30 82.4 8e-11 >seq18 Length=186891 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||||||||||||||| || || || | || || | ||||||||||| || Sbjct 167640 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 167581 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| ||||| || ||||| || || || || || || ||| ||| ||| Sbjct 167580 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 167521 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | || ||||| | || | |||||||| |||||||| || || Sbjct 167520 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACA 167461 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 167460 AATATTTGCAT 167450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| ||||||||||| || | | |||||| |||| ||||| ||||| || Sbjct 167190 GTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCA 167131 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || || ||||| || || || || || || ||||| || || ||| Sbjct 167130 GCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 167071 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| | | || || || | || | |||||||||||||| || Sbjct 167070 ACGTTGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCAAGGTC 167011 Query 64427 TTTACGA 64433 || |||| Sbjct 167010 TTGACGA 167004 >seq30 Length=167504 Score = 82.4 bits (90), Expect = 8e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 64230 TAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGT 64289 |||| || ||||||| ||||| || || || |||||||| || | || ||| || ||| Sbjct 89659 TAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCGT 89601 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 |||| || ||||||||||| | || || || || || || || |||||||| || || | Sbjct 89600 CTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGAATTCCCTCCTTGT 89541 Query 64350 CTTGTATTTT 64359 | || || || Sbjct 89540 CCTGGATCTT 89531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641652237760