Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq104 181 1e-40
>seq104
Length=83277
Score = 181 bits (200), Expect = 1e-40
Identities = 416/624 (67%), Gaps = 2/624 (0%)
Strand=Plus/Minus
Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062
||||| | || ||||| |||| || || ||||| ||| ||| ||| | |||||
Sbjct 48289 TGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCG 48230
Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122
| |||| | || || ||||| || || | ||||||||| | || || ||||| ||
Sbjct 48229 ACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGA 48170
Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182
|| ||||||||| | || | || || || || |||||| | | | ||| |||||
Sbjct 48169 GTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTC 48110
Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242
|| |||| || ||||| |||||||| || || | ||| | || || |||||||||
Sbjct 48109 GCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAAC 48050
Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302
||||| || || || | ||| | || |||||||||||||||||| | ||||| ||
Sbjct 48049 CACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTC 47990
Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC 94362
|| ||||| || || || || ||| | ||||| | | || ||||| || |||||
Sbjct 47989 TTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCT 47930
Query 94363 GGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCA 94421
||| || ||||||| | || | || || || | ||||||| ||||| || |
Sbjct 47929 GGATTGGCCGACGTCTACGG-TGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGA 47871
Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481
||||||| | ||| || | || ||||| ||| | ||| | || | ||
Sbjct 47870 AGGCAAGGGTCGCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCA 47811
Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541
| ||||| || | || | ||| | | |||||| || |||| ||| |||||
Sbjct 47810 GACTGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCA 47751
Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601
|| | ||||| ||| ||||| || ||||||| |||||||||||||| | |
Sbjct 47750 AAAGAATCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTACTGTGC 47691
Query 94602 TCCGGACGAGATTGCTGTGTGTAA 94625
|| || ||| | ||||| || ||
Sbjct 47690 ACCAGATGAGGTCGCTGTTTGCAA 47667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494720083243840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |