Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq104 181 1e-40 >seq104 Length=83277 Score = 181 bits (200), Expect = 1e-40 Identities = 416/624 (67%), Gaps = 2/624 (0%) Strand=Plus/Minus Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062 ||||| | || ||||| |||| || || ||||| ||| ||| ||| | ||||| Sbjct 48289 TGTGCCATGATTTCAAAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCG 48230 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | |||| | || || ||||| || || | ||||||||| | || || ||||| || Sbjct 48229 ACGGGTGCTTATATTGCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGA 48170 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 || ||||||||| | || | || || || || |||||| | | | ||| ||||| Sbjct 48169 GTTTTCAACAACACCGCTAGATATGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCTTTC 48110 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242 || |||| || ||||| |||||||| || || | ||| | || || ||||||||| Sbjct 48109 GCCATCTACCTTGAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAAC 48050 Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302 ||||| || || || | ||| | || |||||||||||||||||| | ||||| || Sbjct 48049 CACGGAAAGGAGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTC 47990 Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC 94362 || ||||| || || || || ||| | ||||| | | || ||||| || ||||| Sbjct 47989 TTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCT 47930 Query 94363 GGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCA 94421 ||| || ||||||| | || | || || || | ||||||| ||||| || | Sbjct 47929 GGATTGGCCGACGTCTACGG-TGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGA 47871 Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 ||||||| | ||| || | || ||||| ||| | ||| | || | || Sbjct 47870 AGGCAAGGGTCGCAAGAGCATCAAAGCCCAAAAGCTTTGGTACTCTATCCTTGAGGCTCA 47811 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 | ||||| || | || | ||| | | |||||| || |||| ||| ||||| Sbjct 47810 GACTGAGACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCA 47751 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 || | ||||| ||| ||||| || ||||||| |||||||||||||| | | Sbjct 47750 AAAGAATCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGAGTACTGTGC 47691 Query 94602 TCCGGACGAGATTGCTGTGTGTAA 94625 || || ||| | ||||| || || Sbjct 47690 ACCAGATGAGGTCGCTGTTTGCAA 47667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720083243840