Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 7e-16 >seq18 Length=186891 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| ||||||||||||||||| | | | || || ||||| ||||| ||| | Sbjct 167640 TCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAA 167581 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||||||||| |||||| || ||||| || || || || ||| | Sbjct 167580 ATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 167521 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || || || | || || || || ||||| || || || |||| ||| || ||| Sbjct 167520 TCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACA 167461 Query 15166 AAAATTTGCATA 15177 || ||||||||| Sbjct 167460 AATATTTGCATA 167449 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || |||||||| || || || ||||| || ||||| ||| || || ||| | || | Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCG--GACAAGGTTCGGCCATCCT 167373 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| ||||| ||| | || | ||||||||||| ||| || || ||||| || Sbjct 167372 CCAATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCT 167313 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| || ||||| | || |||||||| | ||| || || ||||| ||||| | Sbjct 167312 GAATCTTCGACTTTACGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCT 167253 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || || || |||||||| Sbjct 167252 TTCCAGTAAGAGTCTTGACGAAGATTTGCAT 167222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389804719640