Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 3e-15 seq476 86.0 6e-12 >seq18 Length=186891 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | |||||| || | || ||| |||||||| |||||||||| Sbjct 167677 TCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCT 167618 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || | || || || ||| | ||||||||||| || || || || Sbjct 167617 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGG 167558 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| ||| || ||||| | || | ||||||| | ||| || Sbjct 167557 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 167498 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| |||| ||| || ||||| || ||||| Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||| ||||| || || || |||||||| | ||||| || || Sbjct 166918 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCG 166859 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| ||||||| || |||||||| || || ||||||||||||||| | Sbjct 166858 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 166799 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| |||| |||| ||||| | ||| || || | ||| | || || Sbjct 166798 ATCTTGCTCTTGACGTTG-TCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 166740 Query 127084 GCCGGT 127089 ||||| Sbjct 166739 ACCGGT 166734 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | ||||||||||| ||||| ||||| || Sbjct 167221 TCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGA 167162 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || || || || ||||| |||| | || || || || || || Sbjct 167161 AAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 167102 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 |||||||||||||| ||| ||| ||||| |||| |||| ||| || | |||| Sbjct 167101 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCGATGGTATCGCTCGATTCGA 167043 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| ||| | || |||||||||| Sbjct 167042 CCTCGAGGGTGATAGTCTTGCCGGTCA 167016 >seq476 Length=308794 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 |||| || || | |||||| ||||| || |||||||||| || || | ||| Sbjct 12315 CCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGG 12256 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | |||||||| | |||||| | ||||| || || |||||||| || || ||| || Sbjct 12255 GCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTT 12196 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || || ||| ||||| | | || |||||||| |||||| | ||||| | Sbjct 12195 CTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCT 12136 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 | || | || ||||| ||||| ||||||||||| || Sbjct 12135 CTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGT 12099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497804344960