Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq18 96.9 3e-15
seq476 86.0 6e-12
>seq18
Length=186891
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | |||||| || | || ||| |||||||| ||||||||||
Sbjct 167677 TCCTCCACGAAGGCGAAGCACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCT 167618
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| || || ||| || | || || || ||| | ||||||||||| || || || ||
Sbjct 167617 GAGTGTACGGCCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGG 167558
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||| ||| ||| || ||||| | || | ||||||| | ||| ||
Sbjct 167557 AATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAAC 167498
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || ||||| |||| ||| || ||||| || |||||
Sbjct 167497 TTCCAATGTAATAGTCTTGCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964
||||| || | ||| ||||| || || || |||||||| | ||||| || ||
Sbjct 166918 ACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCG 166859
Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024
||||| || ||||| ||||||| || |||||||| || || ||||||||||||||| |
Sbjct 166858 AGCTGCTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 166799
Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083
|| || ||||| |||| |||| ||||| | ||| || || | ||| | || ||
Sbjct 166798 ATCTTGCTCTTGACGTTG-TCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTT 166740
Query 127084 GCCGGT 127089
|||||
Sbjct 166739 ACCGGT 166734
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | ||||| || | ||||||||||| ||||| ||||| ||
Sbjct 167221 TCCACCACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGA 167162
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||||| || || || || || ||||| |||| | || || || || || ||
Sbjct 167161 AAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGG 167102
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|||||||||||||| ||| ||| ||||| |||| |||| ||| || | ||||
Sbjct 167101 GATGCCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCGATGGTATCGCTCGATTCGA 167043
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| ||| | || ||||||||||
Sbjct 167042 CCTCGAGGGTGATAGTCTTGCCGGTCA 167016
>seq476
Length=308794
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
|||| || || | |||||| ||||| || |||||||||| || || | |||
Sbjct 12315 CCGAGGCTGTTGAGATTGAGCAAGAGTTCTTGACCGAGGCTCTTCCTTGTGCTCTTCTGG 12256
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| |||||||| | |||||| | ||||| || || |||||||| || || ||| ||
Sbjct 12255 GCATGAACGCCAACTTGATGAAGCAATACATTGAGTTCGTCGCCGATCGTCTCCTCCTTT 12196
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| || ||| ||||| | | || |||||||| |||||| | ||||| |
Sbjct 12195 CTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTTATGGAGAACATCT 12136
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
| || | || ||||| ||||| ||||||||||| ||
Sbjct 12135 CTCTTGCAGGAAAGACTAACTTCTTCGAGAAGCGTGT 12099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475497804344960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |