Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq104 165 1e-35 seq476 120 4e-22 >seq104 Length=83277 Score = 165 bits (182), Expect = 1e-35 Identities = 1121/1785 (63%), Gaps = 47/1785 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| || ||| || ||| | | ||||| |||||||| || ||| Sbjct 46740 TCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTC 46799 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 ||||| ||| |||||||| | | |||||| || | ||| | ||||| Sbjct 46800 TTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCC 46859 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | |||| || |||||| ||| |||||||| ||||| || || || || ||||| Sbjct 46860 TTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATC 46919 Query 115699 TCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCAT 115756 | | | | | | | ||| | ||||| || || |||| || ||| |||||| Sbjct 46920 TGGACGA--TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAG 46977 Query 115757 CTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATAT 115816 |||| |||| | ||||||||| || ||||| | | || | | |||||| | Sbjct 46978 CTGGAATATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGT 47037 Query 115817 CCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAA 115876 | |||||||| || || | ||||||| | || |||||||| | Sbjct 47038 TATCGGACCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGA 47097 Query 115877 ACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCAT 115936 |||| || || ||| |||| ||| ||||||| || |||||||| |||||||| | Sbjct 47098 ACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGT 47157 Query 115937 TGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || ||| |||| | | ||| | ||| || ||||| || || | ||| | |||||| Sbjct 47158 TGAAACC-AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTG 47216 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--G 116053 |||| || ||| ||| ||| | | |||| || | || | | | Sbjct 47217 CGGATGCCGTGTTGAGCAATCTGTTGCTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGG 47275 Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113 | | | | ||||||| ||| | ||||| || | ||| || || || || | ||| Sbjct 47276 TGTAACAC-CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATG 47334 Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173 |||||||||| || | || | ||||| || | || | || ||||| || | Sbjct 47335 TCTCATATGGACCATGAATTTTTGCCAACTCCACGGAAGCAGTCAAAGCAGCGTGGTAAA 47394 Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG-- 116231 | || || || || | || | |||||| || || || || | || || Sbjct 47395 TGGTTTCGAAGATTTGGATGTTAAGGTGCTTGGCTTCTGGAGACTCGAAAGGAAGGCGAA 47454 Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291 | | || || |||| || |||||||| |||||||| |||| || | || | | Sbjct 47455 GAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAA 47512 Query 116292 ATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| ||||| || ||| || || ||| | || |||||||| | |||| | Sbjct 47513 ATTGCTCTTTCTTGC---CTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAA 47569 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || ||| ||| || | || || || ||||||| | | ||| || || ||||| Sbjct 47570 GTTCTTGACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTT 47629 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 || | ||||| | || || || | || |||| ||| || |||| | |||||| Sbjct 47630 CTCGTCAACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG 47689 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528 || |||||| | ||| || || ||||| || || || ||||| || | ||||| Sbjct 47690 TGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTT 47749 Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588 ||| || |||| ||| || ||||||||||| ||||| | || | || ||||| || Sbjct 47750 TTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGT 47809 Query 116589 TTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 116648 || | || || |||| | ||| | | |||| | || ||| || || Sbjct 47810 CTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGA---TGCTCTTG---CGACC 47863 Query 116649 CT--CCT----CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGA 116702 || ||| |||||| || || | ||||| ||||| ||||| | || | Sbjct 47864 CTTGCCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGC 47923 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 | || || || | || || | | | ||| | | || ||||| ||||| Sbjct 47924 CAATCCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTT 47983 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822 ||||||||| |||||||||||||| || |||||||||| || ||| | || || | Sbjct 47984 CATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTT 48043 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || || | || | || || | | ||| |||||||| || || ||||| Sbjct 48044 TCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTA 48103 Query 116883 CACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 | |||| | || | |||| |||| | || | ||||| || || || Sbjct 48104 GATGGCGAAAGCACCAGGACGCTTG---TTACCACCTTGATCAACATATCTAGCGGTGTT 48160 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACG 116996 ||| || || |||||||| |||| || || | || | || ||||| ||| |||| Sbjct 48161 GTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATA 48220 Query 116997 AG-ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055 || || | | || | || ||| | | | ||| ||||| || || |||||| | Sbjct 48221 AGCACCCG-TCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAA 48279 Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115 | || || | | || ||||||| ||||| || ||| |||| | ||| Sbjct 48280 TCATGGCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGA 48339 Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175 | ||||||||| || | ||||| | |||||||||||| |||||| || || | | Sbjct 48340 TAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGG 48399 Query 117176 CGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 ||||| |||| || ||| ||||||| | ||||||||| | | ||| || || Sbjct 48400 CGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATC 48457 Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || ||||| || |||| | || ||||||| ||| | ||| || Sbjct 48458 CTCGCCGTGGATTCCGACAGCAACGCGCATAATCATATGTTGTGG 48502 >seq476 Length=308794 Score = 120 bits (132), Expect = 4e-22 Identities = 295/445 (66%), Gaps = 12/445 (3%) Strand=Plus/Plus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 || ||||||||||||||||| ||||| || | || ||| ||||||||||| || ||| Sbjct 12099 ACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTCTCCATAAAGTCGAAT 12158 Query 127301 GGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCG 127355 ||||| | ||| || | ||| | || |||||||||||| | Sbjct 12159 GGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAG-----GAGGAGACGATCGG 12213 Query 127356 AGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGA 127415 |||| |||||||||| | |||| | | |||||| || | || ||| || | Sbjct 12214 CGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAA 12273 Query 127416 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG 127475 | || || | |||| | | |||||| || ||||| || | || ||| || | | Sbjct 12274 GAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 12333 Query 127476 TGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTTGGTGG 127534 || | || | || || | |||| |||||| || || || |||| Sbjct 12334 CTGCCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGAAGGCATGCGAAGTCGGTGTGG 12392 Query 127535 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 127594 |||||||| ||||||||||| | || || |||||| ||||| | |||||| || ||| Sbjct 12393 AGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 12452 Query 127595 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 127654 |||||||||||||| || | || |||||| ||||||||| ||||| ||| || Sbjct 12453 TTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGCA 12512 Query 127655 AACGCAAATAGACGCTCGGCAAAGG 127679 || |||| ||||| | ||||||| Sbjct 12513 AAGGCAACAAGACGTTGAGCAAAGG 12537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503334904640