Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq104 165 1e-35
seq476 120 4e-22
>seq104
Length=83277
Score = 165 bits (182), Expect = 1e-35
Identities = 1121/1785 (63%), Gaps = 47/1785 (3%)
Strand=Plus/Plus
Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578
|||| | ||||||| || ||| || ||| | | ||||| |||||||| || |||
Sbjct 46740 TCAACGGTGAACTGGATAGGTGCCGAGGCAGCCATAGTACGGAGATAGTACATTCCAGTC 46799
Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638
||||| ||| |||||||| | | |||||| || | ||| | |||||
Sbjct 46800 TTGAGACCCAGCTTCCAGCCTGCGAAATGCATACTGGTGATCTTACCCATGGTTGGGTCC 46859
Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698
| |||| || |||||| ||| |||||||| ||||| || || || || |||||
Sbjct 46860 TTCATGTGGATGTTCATTGATTGAGATTGATCAATGAATGCACCACGGTCGGCAGCCATC 46919
Query 115699 TCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCAT 115756
| | | | | | | ||| | ||||| || || |||| || ||| ||||||
Sbjct 46920 TGGACGA--TGGTACGTTGTGAGATCTCCCAAACGGTCTTGTAAAGAGCCTTGATATCAG 46977
Query 115757 CTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATAT 115816
|||| |||| | ||||||||| || ||||| | | || | | |||||| |
Sbjct 46978 CTGGAATATTTGGAACATTTTGGATTGATCCACCGTCAGCAATGATACGGTTCTTCATGT 47037
Query 115817 CCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAA 115876
| |||||||| || || | ||||||| | || |||||||| |
Sbjct 47038 TATCGGACCAGAGTCCCATATCAACAAGATCCTTAAGAAGCCATGGGTTGACAACCTGGA 47097
Query 115877 ACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCAT 115936
|||| || || ||| |||| ||| ||||||| || |||||||| |||||||| |
Sbjct 47098 ACTCTCCAGCAAGGACACGTCGAGAATATATGTTGGAGGTATATGGCTCGAAGCACTCGT 47157
Query 115937 TGTTACCCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995
|| ||| |||| | | ||| | ||| || ||||| || || | ||| | ||||||
Sbjct 47158 TGAAACC-AAGAATCTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTG 47216
Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--G 116053
|||| || ||| ||| ||| | | |||| || | || | | |
Sbjct 47217 CGGATGCCGTGTTGAGCAATCTGTTGCTTCAAGCTAGCCCAATCCCAAA-GATCGGTAGG 47275
Query 116054 TCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATG 116113
| | | | ||||||| ||| | ||||| || | ||| || || || || | |||
Sbjct 47276 TGTAACAC-CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTATG 47334
Query 116114 TCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACA 116173
|||||||||| || | || | ||||| || | || | || ||||| || |
Sbjct 47335 TCTCATATGGACCATGAATTTTTGCCAACTCCACGGAAGCAGTCAAAGCAGCGTGGTAAA 47394
Query 116174 TTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG-- 116231
| || || || || | || | |||||| || || || || | || ||
Sbjct 47395 TGGTTTCGAAGATTTGGATGTTAAGGTGCTTGGCTTCTGGAGACTCGAAAGGAAGGCGAA 47454
Query 116232 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 116291
| | || || |||| || |||||||| |||||||| |||| || | || | |
Sbjct 47455 GAGCCAAG--AAGGCATCAGCAAGACCTTGAACACCGAGAGCAATAGGTCTGTGACGGAA 47512
Query 116292 ATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348
||| ||||| || ||| || || ||| | || |||||||| | |||| |
Sbjct 47513 ATTGCTCTTTCTTGC---CTCAGGAACTGGGTAATAGTTGACATCGATAATCTTATTCAA 47569
Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408
|| ||| ||| || | || || || ||||||| | | ||| || || |||||
Sbjct 47570 GTTCTTGACGACTACTTGGCAGACCTCGTGGAGCTTTTGGAAGTCATAAGTGGCAGTCTT 47629
Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468
|| | ||||| | || || || | || |||| ||| || |||| | ||||||
Sbjct 47630 CTCGTCAACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGG 47689
Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTT 116528
|| |||||| | ||| || || ||||| || || || ||||| || | |||||
Sbjct 47690 TGCACAGTACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTT 47749
Query 116529 TTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGT 116588
||| || |||| ||| || ||||||||||| ||||| | || | || ||||| ||
Sbjct 47750 TTGGTTACTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGT 47809
Query 116589 TTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 116648
|| | || || |||| | ||| | | |||| | || ||| || ||
Sbjct 47810 CTGAGCCTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGA---TGCTCTTG---CGACC 47863
Query 116649 CT--CCT----CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGA 116702
|| ||| |||||| || || | ||||| ||||| ||||| | || |
Sbjct 47864 CTTGCCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGC 47923
Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762
| || || || | || || | | | ||| | | || ||||| |||||
Sbjct 47924 CAATCCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTT 47983
Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822
||||||||| |||||||||||||| || |||||||||| || ||| | || || |
Sbjct 47984 CATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTT 48043
Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882
|| || || || | || | || || | | ||| |||||||| || || |||||
Sbjct 48044 TCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTA 48103
Query 116883 CACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGC 116936
| |||| | || | |||| |||| | || | ||||| || || ||
Sbjct 48104 GATGGCGAAAGCACCAGGACGCTTG---TTACCACCTTGATCAACATATCTAGCGGTGTT 48160
Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACG 116996
||| || || |||||||| |||| || || | || | || ||||| ||| ||||
Sbjct 48161 GTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATA 48220
Query 116997 AG-ACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGA 117055
|| || | | || | || ||| | | | ||| ||||| || || |||||| |
Sbjct 48221 AGCACCCG-TCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAA 48279
Query 117056 TTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGA 117115
| || || | | || ||||||| ||||| || ||| |||| | |||
Sbjct 48280 TCATGGCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGA 48339
Query 117116 TGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCG 117175
| ||||||||| || | ||||| | |||||||||||| |||||| || || | |
Sbjct 48340 TAAGGAAGCAGGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGG 48399
Query 117176 CGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233
||||| |||| || ||| ||||||| | ||||||||| | | ||| || ||
Sbjct 48400 CGTGGGTGAA-GTA-TTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATC 48457
Query 117234 TTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
|| ||||| || |||| | || ||||||| ||| | ||| ||
Sbjct 48458 CTCGCCGTGGATTCCGACAGCAACGCGCATAATCATATGTTGTGG 48502
>seq476
Length=308794
Score = 120 bits (132), Expect = 4e-22
Identities = 295/445 (66%), Gaps = 12/445 (3%)
Strand=Plus/Plus
Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300
|| ||||||||||||||||| ||||| || | || ||| ||||||||||| || |||
Sbjct 12099 ACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTCTCCATAAAGTCGAAT 12158
Query 127301 GGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCG 127355
||||| | ||| || | ||| | || |||||||||||| |
Sbjct 12159 GGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAGAGAAAG-----GAGGAGACGATCGG 12213
Query 127356 AGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGA 127415
|||| |||||||||| | |||| | | |||||| || | || ||| || |
Sbjct 12214 CGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAA 12273
Query 127416 GCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGAATAG 127475
| || || | |||| | | |||||| || ||||| || | || ||| || | |
Sbjct 12274 GAGCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTG 12333
Query 127476 TGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCTTGGTGG 127534
|| | || | || || | |||| |||||| || || || ||||
Sbjct 12334 CTGCCTTGCTTGGGCGAT-GCTTCAAGTGAGAGAAGAGAAGGCATGCGAAGTCGGTGTGG 12392
Query 127535 AGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGC 127594
|||||||| ||||||||||| | || || |||||| ||||| | |||||| || |||
Sbjct 12393 AGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACGC 12452
Query 127595 TTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCG 127654
|||||||||||||| || | || |||||| ||||||||| ||||| ||| ||
Sbjct 12453 TTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGCA 12512
Query 127655 AACGCAAATAGACGCTCGGCAAAGG 127679
|| |||| ||||| | |||||||
Sbjct 12513 AAGGCAACAAGACGTTGAGCAAAGG 12537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613503334904640
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