Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq476 95.1 2e-14 seq104 87.8 3e-12 >seq476 Length=308794 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||| || |||||| ||| || ||||| || || ||||| ||||||||||| Sbjct 12366 AAGAGAAGGCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 12425 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | || || | ||||| |||||| || | ||| || |||| || |||| || Sbjct 12426 AAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCA 12485 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| || || ||||| || || || | | | |||| | | | Sbjct 12486 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGATTCC 12545 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143 |||| ||| |||| | ||||| || || ||||| |||||| || Sbjct 12546 TTGTCTTGGATCCATCGGACAGCCCAATCGGCTTTCTTCTTGATGCAAGG 12595 >seq104 Length=83277 Score = 87.8 bits (96), Expect = 3e-12 Identities = 224/341 (66%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 205052 CCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGC 205111 |||| |||||||||||| |||| ||| | || || |||||| ||||| || Sbjct 47868 CCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAT 47927 Query 205112 CCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATA 205171 || ||||| | ||||| ||||||| | ||| | | | || || | || ||| Sbjct 47928 CCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 47987 Query 205172 AACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCA 205231 || || || |||||| || |||| || ||||||||||| | || | || | ||| Sbjct 47988 AAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 48047 Query 205232 AGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACG 205291 |||||||| | || || | | || || |||||||| ||||| | | | | Sbjct 48048 TGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATG 48107 Query 205292 GCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAA 205351 || | || || || | |||||| ||||| || || || | || | ||||||| Sbjct 48108 GCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAA 48167 Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||| ||||| || || | ||||||| | | ||||| || Sbjct 48168 ACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGT 48208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150190522240