Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq476 95.1 2e-14
seq104 87.8 3e-12
>seq476
Length=308794
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| || ||||| || |||||| ||| || ||||| || || ||||| |||||||||||
Sbjct 12366 AAGAGAAGGCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 12425
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| | | || || | ||||| |||||| || | ||| || |||| || |||| ||
Sbjct 12426 AAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCA 12485
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| || || ||||| || || || | | | |||| | | |
Sbjct 12486 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGATTCC 12545
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGG 160143
|||| ||| |||| | ||||| || || ||||| |||||| ||
Sbjct 12546 TTGTCTTGGATCCATCGGACAGCCCAATCGGCTTTCTTCTTGATGCAAGG 12595
>seq104
Length=83277
Score = 87.8 bits (96), Expect = 3e-12
Identities = 224/341 (66%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 205052 CCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGC 205111
|||| |||||||||||| |||| ||| | || || |||||| ||||| ||
Sbjct 47868 CCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAT 47927
Query 205112 CCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATA 205171
|| ||||| | ||||| ||||||| | ||| | | | || || | || |||
Sbjct 47928 CCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 47987
Query 205172 AACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCA 205231
|| || || |||||| || |||| || ||||||||||| | || | || | |||
Sbjct 47988 AAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 48047
Query 205232 AGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACG 205291
|||||||| | || || | | || || |||||||| ||||| | | | |
Sbjct 48048 TGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATG 48107
Query 205292 GCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAA 205351
|| | || || || | |||||| ||||| || || || | || | |||||||
Sbjct 48108 GCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAA 48167
Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||| ||||| || || | ||||||| | | ||||| ||
Sbjct 48168 ACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGT 48208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795150190522240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |