Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq18 113 5e-20
seq30 91.5 2e-13
>seq18
Length=186891
Score = 113 bits (124), Expect = 5e-20
Identities = 128/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| || || |||||||| |||| |||||||||||||| || ||
Sbjct 166901 CTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCGAGCTGCTTGCCAGCAAA 166842
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| || ||||| || | || | || |||||||||| |||||| |||||| |||
Sbjct 166841 GATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 166783
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | |||||| ||| ||||| || | ||||| || || || ||
Sbjct 166782 TGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 166734
Score = 104 bits (114), Expect = 3e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||||||||||||||||||||| | || || | || ||
Sbjct 167430 ACCAAATGAAGTGTGGACTCCTTTTGGATATTGTAGTCGGACAAGGTTCGGCCATCCTCC 167371
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| |||||||| ||||| || | ||||| ||||| | || | | |||||| |||
Sbjct 167370 AATTGCTTGCCTGCGAAAATGAGTCGCTGTTGGTCAGGTGGGATACCCTCCTTATCCTGA 167311
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | ||| | | | || || ||||| || |||| |||||||| ||
Sbjct 167310 ATCTTCGACTTTA-CGTTGTCGATAGTATCTGAAGATTCAACCTCCAAGGTGATGGTCTT 167252
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || || || || || ||||||||||||
Sbjct 167251 TCCAGTAAGAGTCTTGACGAAGATTTGCATT 167221
Score = 104 bits (114), Expect = 3e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || ||||||||||| || ||||| ||| || || || | || ||
Sbjct 167659 CACCAAGTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTC 167600
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| |||||||||||||| ||||| ||||| ||||| | || | | |||||| |||
Sbjct 167599 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTG 167540
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| | | | ||||| || || || |||| || || || ||
Sbjct 167539 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 167480
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||| || || ||||| ||||||||
Sbjct 167479 GCCCGTCAAAGTCTTGACAAATATTTGCAT 167450
Score = 89.7 bits (98), Expect = 6e-13
Identities = 124/171 (73%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
||| || || || |||||||| || || ||||| |||| || || ||||| || || ||
Sbjct 167185 CTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCAAGTTGCTTACCAGCAAA 167126
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | || || ||||| | || | || ||||||||| ||||||| ||||| |||
Sbjct 167125 GATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGA-CGT 167067
Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | || ||||||||||| || || | ||||| || ||||| ||||
Sbjct 167066 TGTCGATGGTATCGCTCGATTCGACCTCGAGGGTGATAGTCTTGCCGGTCA 167016
>seq30
Length=167504
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | || ||| || || ||||| | || |||||| ||||| |||||||| ||
Sbjct 89673 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 89614
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| ||||| |||||||||||||| || | ||| || || || | ||
Sbjct 89613 AGGGTACGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATTAGGCGTTGTTGATCAGGGGGA 89554
Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509
| | |||||||||| ||||||
Sbjct 89553 ATTCCCTCCTTGTCCTGGATCTT 89531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565234838998080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |