Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 104 2e-17 seq30 91.5 1e-13 >seq18 Length=186891 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || | |||||||| || || || | || || ||| | | Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || ||| |||| || || ||||| ||||| | |||||| Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || |||| || | || || |||| ||| |||||| Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| ||| || ||||| |||||||| || Sbjct 167630 ATTCAAAAGGAGAGC-ACTCTGCACTTGGTGCTTCG 167664 Score = 102 bits (112), Expect = 8e-17 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || || || ||||||||| | || || || | | Sbjct 167221 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTC 167280 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 || | | | |||| ||||| || || | || || ||||| || || | ||| Sbjct 167281 AGATACTATCGACAACG--TAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGAC 167338 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| ||||||| ||| ||||| || |||| || | || ||| | ||||||| Sbjct 167339 CAACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTAC 167398 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||||||||| | || || |||||||| || ||| Sbjct 167399 AATATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGT 167437 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || || |||||| | || || ||| | |||||| | | |||| | |||| Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACG--TCAAGA 166791 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| |||||| | || || || || | || | || |||| Sbjct 166792 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCA 166851 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | ||||| || |||| ||||| ||| || ||||||||||| ||||| | ||||| | Sbjct 166852 AGCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTC 166911 Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||| || ||| | | ||||| Sbjct 166912 ACTTGGTCCTCCGTCTTCGTGGCGG 166936 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || | || ||||| || |||||| |||| ||||| | | ||| | | | Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCG 167063 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| || || | |||||||| || ||| Sbjct 167064 ACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTC 167122 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || || || || || || |||| |||||||| ||||||||||| || || Sbjct 167123 ATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAA 167182 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || ||||| || ||| Sbjct 167183 GAGTCTACTCTCCACTTGGTTCTCCGT 167209 >seq30 Length=167504 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||||||| | || ||||| || || || | ||| ||||| Sbjct 89531 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 89590 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || |||| || |||||| |||||||||||||| ||||| |||| || ||| Sbjct 89591 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 89650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169648911360