Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq18 104 2e-17
seq30 91.5 1e-13
>seq18
Length=186891
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||||||||| || || || | |||||||| || || || | || || ||| | |
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || ||| |||| || || ||||| ||||| | ||||||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| || |||| || | || || |||| ||| ||||||
Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAGCGATTACAAC 167629
Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
|| |||||||| ||| || ||||| |||||||| ||
Sbjct 167630 ATTCAAAAGGAGAGC-ACTCTGCACTTGGTGCTTCG 167664
Score = 102 bits (112), Expect = 8e-17
Identities = 156/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || || || || || ||||||||| | || || || | |
Sbjct 167221 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACCATCACCTTGGAGGTTGAATCTTC 167280
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|| | | | |||| ||||| || || | || || ||||| || || | |||
Sbjct 167281 AGATACTATCGACAACG--TAAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCTGAC 167338
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|||||||| ||||||| ||| ||||| || |||| || | || ||| | |||||||
Sbjct 167339 CAACAGCGACTCATTTTCGCAGGCAAGCAATTGGAGGATGGCCGAACCTTGTCCGACTAC 167398
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| ||||||||||| | || || |||||||| || |||
Sbjct 167399 AATATCCAAAAGGAGTCCACACTTCATTTGGTCCTTCGT 167437
Score = 86.0 bits (94), Expect = 6e-12
Identities = 144/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| || || || |||||| | || || ||| | |||||| | | |||| | ||||
Sbjct 166734 ACCGGTAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAACG--TCAAGA 166791
Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385
|| |||| ||||| ||||| |||||| | || || || || | || | || ||||
Sbjct 166792 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAACGTTTGATCTTTGCTGGCA 166851
Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445
| ||||| || |||| ||||| ||| || ||||||||||| ||||| | ||||| |
Sbjct 166852 AGCAGCTCGAGGACGGACGCACTCTCTCTGATTACAACATCCAGAAGGAGTCCACGCTTC 166911
Query 38446 ATTTGGTGCTGCGTTTGAGAGGCGG 38470
| ||||| || ||| | | |||||
Sbjct 166912 ACTTGGTCCTCCGTCTTCGTGGCGG 166936
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || | || ||||| || |||||| |||| ||||| | | ||| | | |
Sbjct 167004 TCGTCAAGACCTTGACCGGCAAGACTATCACCCTCGAGGTCGAATCGAGCGATACCATCG 167063
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || |||| ||||| ||||| || || | |||||||| || |||
Sbjct 167064 ACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAACAACGTCTC 167122
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || || || || || || |||| |||||||| ||||||||||| || ||
Sbjct 167123 ATCTTTGCTGGTAAGCAACTTGAGGACGGCCGCACCCTTTCGGACTACAACATTCAGAAA 167182
Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGT 38459
|| | || || || ||||| || |||
Sbjct 167183 GAGTCTACTCTCCACTTGGTTCTCCGT 167209
>seq30
Length=167504
Score = 91.5 bits (100), Expect = 1e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||||||| | || ||||| || || || | ||| |||||
Sbjct 89531 AAGATCCAGGACAAGGAGGGAATTCCCCCTGATCAACAACGCCTAATCTTCGCCGGCAAG 89590
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || |||| || |||||| |||||||||||||| ||||| |||| || |||
Sbjct 89591 CAACTCGAAGACGGCCGTACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 89650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500169648911360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |