Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq76 113 3e-19
seq485 111 1e-18
seq453 87.8 1e-11
>seq76
Length=110257
Score = 113 bits (124), Expect = 3e-19
Identities = 247/368 (67%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
|| || |||||||| | |||||| ||||| |||||||| ||||| |||| | ||||||
Sbjct 91767 ATTCCGTTGGCATCGACATCAAAGGTGACCTCAATTTGTGGGACACCTCGTGGCGCAGGT 91826
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | ||| | |||| | || || || || ||| || || |||
Sbjct 91827 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 91886
Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453
|||||||| | ||||||| || ||| ||| || || || | || | || || |
Sbjct 91887 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 91946
Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513
|| || || || || || |||||||| || | |||||||| |||||| ||
Sbjct 91947 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 92006
Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571
|| || | ||| || || | || | |||||| | |||| || | || | | ||
Sbjct 92007 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 92066
Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630
| | || | || ||||| || || |||| |||||||| ||||||||||| |||
Sbjct 92067 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 92126
Query 517631 TCAGGATT 517638
||||| ||
Sbjct 92127 TCAGGGTT 92134
>seq485
Length=272343
Score = 111 bits (122), Expect = 1e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
|| || || || || |||| |||||||||||||| || || | | ||||| ||| |||
Sbjct 127529 TTCTCGAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 127470
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
||||| |||||| || ||||| || |||||||| | |||||||||||| || |||||
Sbjct 127469 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 127410
Query 518288 GGAACAGTAATAACGGCAT 518306
|| || || | ||||||||
Sbjct 127409 GGGACTGTGACAACGGCAT 127391
>seq453
Length=375474
Score = 87.8 bits (96), Expect = 1e-11
Identities = 191/285 (67%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084
|||| ||||||| ||||||||| | |||| || | ||||| | || ||||| |
Sbjct 77799 TATCGAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTAGCCTTGACGGTGAAAACAC 77858
Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144
|| | | | | || | ||||| ||||| ||||| | ||| |||| | |
Sbjct 77859 CACCCTGGATGTTAAGGAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAAATCAAGA 77918
Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
|||| || |||| ||| ||| | | ||||| || || | |||||| |||||
Sbjct 77919 CATTTCGCTCCTTGT--TGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 77976
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
||| || || || |||| | |||||||||||| ||||| |||||||| || |||||
Sbjct 77977 TGGCTCGTTGATGATTCGGAGAACATTAAGACCGGCAATGGCACCTGCATCCTTGGTGGC 78036
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
||| | || ||||| || || || || ||||| || || ||
Sbjct 78037 TTGACGCTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 78081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780797389859824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |