Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq76 113 3e-19 seq485 111 1e-18 seq453 87.8 1e-11 >seq76 Length=110257 Score = 113 bits (124), Expect = 3e-19 Identities = 247/368 (67%), Gaps = 3/368 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || |||||||| | |||||| ||||| |||||||| ||||| |||| | |||||| Sbjct 91767 ATTCCGTTGGCATCGACATCAAAGGTGACCTCAATTTGTGGGACACCTCGTGGCGCAGGT 91826 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 91827 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 91886 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 91887 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCGGAGAAGGTGGAGAAGACCTCG 91946 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| || | |||||||| |||||| || Sbjct 91947 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATGAGCTTGGTCATTTGACCACCAGCA 92006 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | ||| || || | || | |||||| | |||| || | || | | || Sbjct 92007 GTCTCGATACCGAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 92066 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | || ||||| || || |||| |||||||| ||||||||||| ||| Sbjct 92067 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGAACGGCAGCACCGTATGCAACAGCCTCA 92126 Query 517631 TCAGGATT 517638 ||||| || Sbjct 92127 TCAGGGTT 92134 >seq485 Length=272343 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || || || || || |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 127529 TTCTCGAGTCCGTATGCAAGCGCAGCAGCAGTTGGCTCGTTGACCACTCTCAGAACGTTA 127470 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| |||||| || ||||| || |||||||| | |||||||||||| || ||||| Sbjct 127469 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTATGCT 127410 Query 518288 GGAACAGTAATAACGGCAT 518306 || || || | |||||||| Sbjct 127409 GGGACTGTGACAACGGCAT 127391 >seq453 Length=375474 Score = 87.8 bits (96), Expect = 1e-11 Identities = 191/285 (67%), Gaps = 7/285 (2%) Strand=Plus/Plus Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 |||| ||||||| ||||||||| | |||| || | ||||| | || ||||| | Sbjct 77799 TATCGAAATCTTGACCTCCCAAATGGGTATCACCAGCAGTAGCCTTGACGGTGAAAACAC 77858 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 || | | | | || | ||||| ||||| ||||| | ||| |||| | | Sbjct 77859 CACCCTGGATGTTAAGGAGGGAAACATCGAAAGTTCCTCCACCAAGATCGTAAATCAAGA 77918 Query 518145 CATTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 |||| || |||| ||| ||| | | ||||| || || | |||||| ||||| Sbjct 77919 CATTTCGCTCCTTGT--TGGACTTTCCGGCACCGAGACCGTATGCGATAGCAGCGGCAGT 77976 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||| || || || |||| | |||||||||||| ||||| |||||||| || ||||| Sbjct 77977 TGGCTCGTTGATGATTCGGAGAACATTAAGACCGGCAATGGCACCTGCATCCTTGGTGGC 78036 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| | || ||||| || || || || ||||| || || || Sbjct 78037 TTGACGCTGGTTGTCGTTGAAGTAGGCTGGGACAGTGATGACTGC 78081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780797389859824