Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq76 279 7e-70
seq453 167 3e-36
seq104 120 4e-22
seq222 87.8 2e-12
seq345 84.2 3e-11
>seq76
Length=110257
Score = 279 bits (308), Expect = 7e-70
Identities = 513/749 (68%), Gaps = 6/749 (1%)
Strand=Plus/Plus
Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465
||||| || || ||||| ||||| | | ||||| || ||||| |||||||||
Sbjct 92529 TTCTTGTGCTTGCGTTTGAACTCGTTAACAAAGTGGTTAACAAGTCTGTTATCGAAATCC 92588
Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525
|||||||||||||| ||||| || ||||| | |||||||| |||||||| | || |||
Sbjct 92589 TCACCACCCAAGTGAGTATCACCTGCGGTGGACTTGACTTCGAAGATACCCTCCTCGATG 92648
Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585
| || | || ||||| || || || ||||| || ||||| ||||| || || ||
Sbjct 92649 GTCAAGAGTGAGACATCGAAGGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGCTCA 92708
Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645
| || ||||| ||||||||||| || || || || || || || || || || ||
Sbjct 92709 CCCTCAACCTTCTTGTCGAGACCGTATGCAATGGCTGCAGCGGTAGGCTCGTTGATGATT 92768
Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705
|| ||| || || ||||| || | ||||| || || ||||| ||||| ||||||
Sbjct 92769 CGGAGAACATTGAGACCAGCGATTAAACCGGCATCCTTGGTGGCTTGACGTTGTGAATCG 92828
Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765
| || || || ||||| || ||||| |||| |||| | || || || | ||
Sbjct 92829 GTGAAATATGCTGGGACAGTAACGACGGCGTTGTTGACGGTTCCGCCAAGGTAAGCCTCG 92888
Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825
|| | ||| |||| ||| | | ||| || || || ||||| | | ||||| |||
Sbjct 92889 GCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAACTGCTTC 92948
Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885
| || || || || |||| || | | || || || || ||| | || || |
Sbjct 92949 TTCTCGCCCTTGAACTCAATCTCGACGACTGGCTT-TC--CACCACGGTCGAGGACGGTG 93005
Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945
| | | | ||||| || | ||||| | ||||| | ||||||| |||||| | |
Sbjct 93006 AAAGGGAAGTGCTTCATGTCAGCCTGGACTTCCTGGTCTGCGAACTTTCGTCCGATCAAA 93065
Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005
|||||||| || || |||||||| |||||||||||| ||||||||| || || ||
Sbjct 93066 CGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCT 93125
Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065
||||| ||||| || || || || || || ||| | || ||||| ||||| || ||
Sbjct 93126 CCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCC 93182
Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125
|||||||| || ||||| || | || || | | ||| || || || || || ||
Sbjct 93183 TGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTG 93242
Query 8126 GTTCCTAAATCAATACCGATTGCTTGAGT 8154
||||| | ||| ||||| || || ||||
Sbjct 93243 GTTCCAAGATCGATACCTATGGCCGGAGT 93271
>seq453
Length=375474
Score = 167 bits (184), Expect = 3e-36
Identities = 350/516 (68%), Gaps = 17/516 (3%)
Strand=Plus/Plus
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||| ||||| |||||||| || | | ||| || | || ||| | || ||||||
Sbjct 77591 TCCTCGAAACGAGCACGGGTGATTTGAGCGTTGAAGTCCTCTCCATCGAACAAGGAATCA 77650
Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364
|| |||| || ||||| || ||| | | | | |||| ||| || ||||| || || |
Sbjct 77651 ATCTCAACAGTGGTTTGGGCACCGTTGGAAAGA--GTTCTCTTAGCACGCTCGCAAGCAG 77708
Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424
| || | ||| ||||| ||||| | | |||||| | ||| ||||| || | | | |
Sbjct 77709 TACGAAGACGTCGAAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 77768
Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
| || | |||||| |||| ||| | | ||||||||||| ||| ||||| || |||
Sbjct 77769 ATTCCTTCTTGAAGTGATCGAGCAAGT-TGGTATCGAAATCTTGACCTCCCAAATGGGTA 77827
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || || || || ||||| || | ||| || | ||||| | | ||||||||
Sbjct 77828 TCACCAGCAGTAGCCTTGACGGTGAAAACACCACCCTGGATGTTAAGGAGGGAAACATCG 77887
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT--- 7599
|| || || ||||| || || |||| | || || ||| || | ||| |||
Sbjct 77888 AAAGTTCCTCCACCAAGATCGTAAATCAAGACATT----TCGCTCCTTGTTGGACTTTCC 77943
Query 7600 ---ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656
| |||||||||| |||||||| || || ||||| || || || || || ||| ||
Sbjct 77944 GGCACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACATT 78003
Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716
|| || ||||| | | ||||| || || ||||| || || ||||| ||||||||
Sbjct 78004 AAGACCGGCAATGGCACCTGCATCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGC 78063
Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||||| || | ||| || | | || ||||| ||
Sbjct 78064 TGGGACAGTGATGACTGCCTTGGCAACCTTCTTGCC 78099
>seq104
Length=83277
Score = 120 bits (132), Expect = 4e-22
Identities = 338/516 (66%), Gaps = 11/516 (2%)
Strand=Plus/Plus
Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513
|||||||| ||||||||||| || | | | || ||||| | |||||| ||||| | |
Sbjct 47868 CCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAT 47927
Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573
|| || | || || | ||||| ||| | | | |||||| || ||||||
Sbjct 47928 CCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 47987
Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633
|| | |||||| ||||| | || | ||||| || || | |||| || | ||
Sbjct 47988 AAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 48047
Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693
|| ||| || | || || || |||| || ||| ||||||||||| || | ||||
Sbjct 48048 TGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATG 48107
Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747
|| | || || | ||||| || |||||| |||||||| ||||| |||
Sbjct 48108 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTG 48164
Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807
| ||||| | ||| |||| ||| || | ||| |||| ||||| || ||||| |
Sbjct 48165 AAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCA 48224
Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867
| ||||| | |||||| | | || ||||| ||||| ||| ||
Sbjct 48225 CCCGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATG 48284
Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927
||||| ||| | ||| ||||| ||||| || || || || ||||| | | || |||
Sbjct 48285 GCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 48344
Query 105928 AAACACGATGACATTTGTGGTCTG-GGTGTACCAGC 105962
|| || ||||| | |||| | ||| |||||||||||
Sbjct 48345 AAGCAGGATGAAAGTTGT-GCCTGTGGTGTACCAGC 48379
>seq222
Length=1012068
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507
||| ||||| |||||||||||||| || ||||||||||| || ||| | | ||||
Sbjct 850579 CTTTCCAATTGCATCAATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 850638
Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566
| |||| | ||| || ||||| || || || || |||||||| || |||||| |
Sbjct 850639 TGCAAAGAGATCTCGAACTCTGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGA 850698
Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626
||| | ||| ||||| ||||| || || || || ||| | || ||||| | |
Sbjct 850699 ACCACTAACGCTGAA-GAAAGGCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGG 850757
Query 11627 TTTTACCTGTACCTGGT 11643
| ||||| ||||| |||
Sbjct 850758 TCTTACCAGTACCGGGT 850774
>seq345
Length=432923
Score = 84.2 bits (92), Expect = 3e-11
Identities = 229/344 (67%), Gaps = 9/344 (3%)
Strand=Plus/Minus
Query 11452 CCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATT-C 11510
|||| || |||| ||| || || || | |||| ||| ||||||| | || || |
Sbjct 172095 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGT-GATTTTCCCTTGGCAGCAGC 172037
Query 11511 AAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCC 11570
||||| ||||| |||| ||||| ||||| || || | | || |||| || ||
Sbjct 172036 AAATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCC 171977
Query 11571 CGAACACTGAATAAAA--GGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTT 11628
|| || |||| || | |||||| || |||||| || | || ||||||||||| ||
Sbjct 171976 AGA-CA-TGAAGAAGAATGGAACGCCAGCTTCACCGGCAACCGCTCGTGCTAAAAGAGTC 171919
Query 11629 TTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCA 11688
|| || ||||| || ||| ||| | | | ||| |||| | ||| |||| | |
Sbjct 171918 TTTCCAGTACCAGGAGGACCAACTAAAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTA 171859
Query 11689 AAGTACTTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTA 11748
| ||||||| || |||||| || || || | |||| || || ||||| ||
Sbjct 171858 GAAAACTTTTCAGGATTCTTGAGGAATTCCACGAGATCTTGAAGTTCTTCTTTTGCCTCG 171799
Query 11749 TCTATACCCTGAACATCATCAAACCGTACTGTTATTTGATTTTC 11792
|| ||| || |||||| || || |||| ||||||||||
Sbjct 171798 TCGCAACCATGGACATCAGAGAATCGAACTG---TTTGATTTTC 171758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128798663360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |