Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq76 279 7e-70 seq453 167 3e-36 seq104 120 4e-22 seq222 87.8 2e-12 seq345 84.2 3e-11 >seq76 Length=110257 Score = 279 bits (308), Expect = 7e-70 Identities = 513/749 (68%), Gaps = 6/749 (1%) Strand=Plus/Plus Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| || || ||||| ||||| | | ||||| || ||||| ||||||||| Sbjct 92529 TTCTTGTGCTTGCGTTTGAACTCGTTAACAAAGTGGTTAACAAGTCTGTTATCGAAATCC 92588 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 |||||||||||||| ||||| || ||||| | |||||||| |||||||| | || ||| Sbjct 92589 TCACCACCCAAGTGAGTATCACCTGCGGTGGACTTGACTTCGAAGATACCCTCCTCGATG 92648 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | || | || ||||| || || || ||||| || ||||| ||||| || || || Sbjct 92649 GTCAAGAGTGAGACATCGAAGGTTCCTCCACCAAGATCAAAGATGAGAACATTTCGCTCA 92708 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | || ||||| ||||||||||| || || || || || || || || || || || Sbjct 92709 CCCTCAACCTTCTTGTCGAGACCGTATGCAATGGCTGCAGCGGTAGGCTCGTTGATGATT 92768 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || ||| || || ||||| || | ||||| || || ||||| ||||| |||||| Sbjct 92769 CGGAGAACATTGAGACCAGCGATTAAACCGGCATCCTTGGTGGCTTGACGTTGTGAATCG 92828 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 | || || || ||||| || ||||| |||| |||| | || || || | || Sbjct 92829 GTGAAATATGCTGGGACAGTAACGACGGCGTTGTTGACGGTTCCGCCAAGGTAAGCCTCG 92888 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || | ||| |||| ||| | | ||| || || || ||||| | | ||||| ||| Sbjct 92889 GCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAACTGCTTC 92948 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 | || || || || |||| || | | || || || || ||| | || || | Sbjct 92949 TTCTCGCCCTTGAACTCAATCTCGACGACTGGCTT-TC--CACCACGGTCGAGGACGGTG 93005 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | | | ||||| || | ||||| | ||||| | ||||||| |||||| | | Sbjct 93006 AAAGGGAAGTGCTTCATGTCAGCCTGGACTTCCTGGTCTGCGAACTTTCGTCCGATCAAA 93065 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 |||||||| || || |||||||| |||||||||||| ||||||||| || || || Sbjct 93066 CGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCT 93125 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||| || || || || || || ||| | || ||||| ||||| || || Sbjct 93126 CCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTGGTTCGGTTTCCC 93182 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 |||||||| || ||||| || | || || | | ||| || || || || || || Sbjct 93183 TGGTCGTTGGCGATAATCTCAATTCGATCATCACGGTAGATACCTACACAGGAGTAGGTG 93242 Query 8126 GTTCCTAAATCAATACCGATTGCTTGAGT 8154 ||||| | ||| ||||| || || |||| Sbjct 93243 GTTCCAAGATCGATACCTATGGCCGGAGT 93271 >seq453 Length=375474 Score = 167 bits (184), Expect = 3e-36 Identities = 350/516 (68%), Gaps = 17/516 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| || | | ||| || | || ||| | || |||||| Sbjct 77591 TCCTCGAAACGAGCACGGGTGATTTGAGCGTTGAAGTCCTCTCCATCGAACAAGGAATCA 77650 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||| || ||||| || ||| | | | | |||| ||| || ||||| || || | Sbjct 77651 ATCTCAACAGTGGTTTGGGCACCGTTGGAAAGA--GTTCTCTTAGCACGCTCGCAAGCAG 77708 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 | || | ||| ||||| ||||| | | |||||| | ||| ||||| || | | | | Sbjct 77709 TACGAAGACGTCGAAGAGCACGGGCATCACCGGACAAATCCTTCTTGGTCTTTCTTGTGA 77768 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 | || | |||||| |||| ||| | | ||||||||||| ||| ||||| || ||| Sbjct 77769 ATTCCTTCTTGAAGTGATCGAGCAAGT-TGGTATCGAAATCTTGACCTCCCAAATGGGTA 77827 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| || | ||| || | ||||| | | |||||||| Sbjct 77828 TCACCAGCAGTAGCCTTGACGGTGAAAACACCACCCTGGATGTTAAGGAGGGAAACATCG 77887 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTTTGTTCTT--- 7599 || || || ||||| || || |||| | || || ||| || | ||| ||| Sbjct 77888 AAAGTTCCTCCACCAAGATCGTAAATCAAGACATT----TCGCTCCTTGTTGGACTTTCC 77943 Query 7600 ---ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 | |||||||||| |||||||| || || ||||| || || || || || ||| || Sbjct 77944 GGCACCGAGACCGTATGCGATAGCAGCGGCAGTTGGCTCGTTGATGATTCGGAGAACATT 78003 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || || ||||| | | ||||| || || ||||| || || ||||| |||||||| Sbjct 78004 AAGACCGGCAATGGCACCTGCATCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGC 78063 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || | ||| || | | || ||||| || Sbjct 78064 TGGGACAGTGATGACTGCCTTGGCAACCTTCTTGCC 78099 >seq104 Length=83277 Score = 120 bits (132), Expect = 4e-22 Identities = 338/516 (66%), Gaps = 11/516 (2%) Strand=Plus/Plus Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513 |||||||| ||||||||||| || | | | || ||||| | |||||| ||||| | | Sbjct 47868 CCTTCAGACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAAT 47927 Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573 || || | || || | ||||| ||| | | | |||||| || |||||| Sbjct 47928 CCAGGACACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 47987 Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633 || | |||||| ||||| | || | ||||| || || | |||| || | || Sbjct 47988 AAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCG 48047 Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693 || ||| || | || || || |||| || ||| ||||||||||| || | |||| Sbjct 48048 TGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATG 48107 Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747 || | || || | ||||| || |||||| |||||||| ||||| ||| Sbjct 48108 GCGAAAGCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTG 48164 Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807 | ||||| | ||| |||| ||| || | ||| |||| ||||| || ||||| | Sbjct 48165 AAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCA 48224 Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867 | ||||| | |||||| | | || ||||| ||||| ||| || Sbjct 48225 CCCGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATG 48284 Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927 ||||| ||| | ||| ||||| ||||| || || || || ||||| | | || ||| Sbjct 48285 GCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGG 48344 Query 105928 AAACACGATGACATTTGTGGTCTG-GGTGTACCAGC 105962 || || ||||| | |||| | ||| ||||||||||| Sbjct 48345 AAGCAGGATGAAAGTTGT-GCCTGTGGTGTACCAGC 48379 >seq222 Length=1012068 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507 ||| ||||| |||||||||||||| || ||||||||||| || ||| | | |||| Sbjct 850579 CTTTCCAATTGCATCAATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 850638 Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566 | |||| | ||| || ||||| || || || || |||||||| || |||||| | Sbjct 850639 TGCAAAGAGATCTCGAACTCTGGAAGCACCAACACCAACAAACATCTCCACGAACTCGGA 850698 Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626 ||| | ||| ||||| ||||| || || || || ||| | || ||||| | | Sbjct 850699 ACCACTAACGCTGAA-GAAAGGCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGG 850757 Query 11627 TTTTACCTGTACCTGGT 11643 | ||||| ||||| ||| Sbjct 850758 TCTTACCAGTACCGGGT 850774 >seq345 Length=432923 Score = 84.2 bits (92), Expect = 3e-11 Identities = 229/344 (67%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 11452 CCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAATT-C 11510 |||| || |||| ||| || || || | |||| ||| ||||||| | || || | Sbjct 172095 CCAACTGCGTCAAGTTCGTCAATGAAAACAATAGCAGGT-GATTTTCCCTTGGCAGCAGC 172037 Query 11511 AAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCC 11570 ||||| ||||| |||| ||||| ||||| || || | | || |||| || || Sbjct 172036 AAATAATTCACGAACTCGCTTTGCACCTACACCAACGTAGACCTCGTCGAATTCAGATCC 171977 Query 11571 CGAACACTGAATAAAA--GGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTGTT 11628 || || |||| || | |||||| || |||||| || | || ||||||||||| || Sbjct 171976 AGA-CA-TGAAGAAGAATGGAACGCCAGCTTCACCGGCAACCGCTCGTGCTAAAAGAGTC 171919 Query 11629 TTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCA 11688 || || ||||| || ||| ||| | | | ||| |||| | ||| |||| | | Sbjct 171918 TTTCCAGTACCAGGAGGACCAACTAAAAGTACTCCCTTTGGAAGTTTGCCACCAAGAGTA 171859 Query 11689 AAGTACTTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTA 11748 | ||||||| || |||||| || || || | |||| || || ||||| || Sbjct 171858 GAAAACTTTTCAGGATTCTTGAGGAATTCCACGAGATCTTGAAGTTCTTCTTTTGCCTCG 171799 Query 11749 TCTATACCCTGAACATCATCAAACCGTACTGTTATTTGATTTTC 11792 || ||| || |||||| || || |||| |||||||||| Sbjct 171798 TCGCAACCATGGACATCAGAGAATCGAACTG---TTTGATTTTC 171758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128798663360