Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq104 257 2e-63
seq476 118 1e-21
seq222 95.1 2e-14
seq311 91.5 2e-13
>seq104
Length=83277
Score = 257 bits (284), Expect = 2e-63
Identities = 1178/1835 (64%), Gaps = 75/1835 (4%)
Strand=Plus/Minus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| || ||| |||||||||||||| | || |||| | || ||||| | |||
Sbjct 48568 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 48512
Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662
||| ||||| | ||| | ||||| || || |||| ||||| || || |||||
Sbjct 48511 TGTGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATC 48452
Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCA 111722
|| ||| | ||||| ||| || ||||||| | |||| |||||| | ||
Sbjct 48451 GAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCCCCC 48392
Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782
|| |||||| |||||||||||| | ||| | || || |||||||| | |
Sbjct 48391 ACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 48332
Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTC 111838
|||||||| || |||| || |||| ||| | |||| |||||| || ||
Sbjct 48331 AAGGAGGACAGCATTGATGGTATCTACGACAC----ATTGAAAATTTGTGCCATGATTTC 48276
Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897
|||| |||||||||||||| | | | || || | || | | || || ||
Sbjct 48275 AAAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGA-CGGGTGCTTATA 48217
Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957
|| |||||||| || | || | || ||| |||| |||||||| || || ||| ||
Sbjct 48216 TTGCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACA 48157
Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATC 112011
| || | ||||| | |||| ||| | |||| || || |||| |||| |
Sbjct 48156 CCGCTAGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACC 48100
Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071
|||||||||||||||| ||| | | ||||||||||| | || ||||| || | |
Sbjct 48099 TTGAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGG 48040
Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131
|||||| || ||| |||||||||| |||||||||||| ||||||||||||||||||
Sbjct 48039 AGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGC 47980
Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191
| ||||| ||| | ||| | | | || || || || || || | |||
Sbjct 47979 GTGTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCG 47920
Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAA-GAAAGTCGG 112247
| | | ||||| ||||| || || | || || |||||| ||| | |||
Sbjct 47919 ACGTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTC 47860
Query 112248 GCGACTGCGACGGTG-CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGA 112306
|| | || | | ||| || | ||| | |||| || || |||| || ||
Sbjct 47859 GCAAGAGCATCAAAGCCCAAAAGC-----TTTGGTACTCTATCCTTGAGGCTCAGACTGA 47805
Query 112307 GACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366
||| || | || | ||||||||||| || || || |||| ||||||||| ||||||||
Sbjct 47804 GACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAA 47745
Query 112367 TTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AA 112424
| | ||| ||| || |||||| | || || || || | || ||| | || |
Sbjct 47744 TCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCA 47687
Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-A 112483
|||||| ||||| || || | ||||| | |||||||| | ||||| || | || |
Sbjct 47686 GATGAGGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGA-CGAGAA 47628
Query 112484 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543
||| || | ||| | |||| |||||||| || || ||| || ||| |
Sbjct 47627 GACTGCCACTTATGACTTCCAAAAGCTCCACGAGGTCTGCCAAGTAGTCGTCAAGAACTT 47568
Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 112600
|| | |||| ||| || | |||||| || |||| || | || ||| |
Sbjct 47567 GAATAAGATTATCGATGTCAACTATTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTT 47511
Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG 112660
| ||| | || |||| ||||||||| |||||||| || |||| ||| | | |||
Sbjct 47510 CCGTCACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCG 47451
Query 112661 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTA 112720
|| | || || || ||||| ||| | | || | || || || || || ||
Sbjct 47450 CCTTCCTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTA 47391
Query 112721 TCACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777
||||| ||| |||| | ||| |||||||||| | || ||||||||||||| ||
Sbjct 47390 CCACGCTGCT-TTGA--CTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGAC 47334
Query 112778 CTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836
| | || || || || || |||||| | ||| |||| ||| ||||||| || | |
Sbjct 47333 ATACCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACA 47276
Query 112837 CCAAGC-TTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894
|| | | || | || |||| ||| | ||| ||| || | | || | ||
Sbjct 47275 CCTACCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATTGCTCAACACGGCATCCG 47217
Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954
|||||| | | | || || |||||||| ||| ||| || || | ||| ||
Sbjct 47216 CAACAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAA 47157
Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014
|| ||||| || || || || | ||||| ||| || | ||| || ||||||||
Sbjct 47156 CGAGTGCTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTT 47097
Query 113015 TGTGATTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 113072
| |||||||| ||| || | | || || || || || ||||||||| |
Sbjct 47096 CCAGGTTGTCAAC--CCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGAT 47039
Query 113073 GATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATAT 113128
| |||||| | | ||| || ||| ||||| || || |||||| || ||||
Sbjct 47038 AACATGAAGAACCGTATCATTGCTGA----CGGTGGATCAATCCAAAATGTTCCAAATAT 46983
Query 113129 TCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTC 113186
||||| ||| || ||| | ||| || |||||||| | ||| | | | | ||
Sbjct 46982 TCCAGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TC 46925
Query 113187 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC 113246
| | ||||| || || |||||| |||||||||||| |||| ||||| | |
Sbjct 46924 GTCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCAC 46865
Query 113247 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGT 113306
||| | ||||| ||| ||| || | |||||| | | |||||| ||||
Sbjct 46864 ATGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGT 46805
Query 113307 CTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 113341
||||| || || ||||| || ||||| ||| |||
Sbjct 46804 CTCAAGACTGGAATGTACTATCTCCGTACTATGGC 46770
>seq476
Length=308794
Score = 118 bits (130), Expect = 1e-21
Identities = 155/212 (73%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168
|||||| || || | |||||||| ||||||||| | ||| | | |||| | |
Sbjct 12599 AGTTCCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATC 12540
Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228
| |||||||| | || || | || ||||| ||||||||||||||||||| ||| |
Sbjct 12539 -TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481
Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288
| ||| | | || | ||| | |||||||| || |||||| | ||||| ||||||||
Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421
Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||| | ||||| ||||| ||||| ||||||
Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 12389
>seq222
Length=1012068
Score = 95.1 bits (104), Expect = 2e-14
Identities = 219/326 (67%), Gaps = 18/326 (6%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032
|||||||||||||| ||||||| ||| || | ||| || || |||||||| | |
Sbjct 850493 AAACCATCCATCTCGGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCATCATTTCCACCA 850552
Query 16033 GCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088
|| | | ||||| | | | |||||| | |||||||| |||||||||||||
Sbjct 850553 CCAAATGAACCAGCTTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAATGAAGATA 850612
Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
|| || || ||| | | || | | |||||||||| || || | || || |||
Sbjct 850613 ATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGATCTCGAACTCTGGAAGCACCAACA 850672
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATT-----GGATGAAGGGGACATTA 16202
||||||||||||||||| || | ||||| || | || ||| || |||
Sbjct 850673 CCAACAAACATCTCCACGAACT------CGGAACCACTAACGCTGAAGAAAGGCACACCC 850726
Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262
|| || || || |||| || || | |||||||| ||||| || ||| | |||
Sbjct 850727 GACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGTACCGGGTGGACCAGAAAGG 850786
Query 16263 AGGGCACCTCGTGGAATCTTGGCGCC 16288
| ||| ||||| |||||||| || ||
Sbjct 850787 ATGGCTCCTCGGGGAATCTTAGCTCC 850812
>seq311
Length=439650
Score = 91.5 bits (100), Expect = 2e-13
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659
||| || || || |||||| |||||||| || ||||||||||| | |||||||||||
Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957
Query 163660 TGGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGA 163718
|| || ||||| |||||||| ||| ||| || || | |||||| ||| |||| ||||
Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAA-TTGGTCTTGGAGA 349016
Query 163719 GGTGTGAGACACCCGATGT 163737
| | |||||||| ||
Sbjct 349017 GAATCTACACACCCGAGGT 349035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620738489322880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |