Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq104 257 2e-63 seq476 118 1e-21 seq222 95.1 2e-14 seq311 91.5 2e-13 >seq104 Length=83277 Score = 257 bits (284), Expect = 2e-63 Identities = 1178/1835 (64%), Gaps = 75/1835 (4%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || || ||| |||||||||||||| | || |||| | || ||||| | ||| Sbjct 48568 TACTTCGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 48512 Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662 ||| ||||| | ||| | ||||| || || |||| ||||| || || ||||| Sbjct 48511 TGTGAACGTCCACAACATATGATTATGCGCGTTGCTGTCGGAATCCACGGCGAGGATATC 48452 Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCA 111722 || ||| | ||||| ||| || ||||||| | |||| |||||| | || Sbjct 48451 GAGGCTGCCATCGAGACCTACAACTTGATGTCCAGCAAATACTTCACCCACGCCTCCCCC 48392 Query 111723 ACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC 111782 || |||||| |||||||||||| | ||| | || || |||||||| | | Sbjct 48391 ACACTCTTCGCAGCTGGTACACCACAGGCACAACTTTCATCCTGCTTCCTTATCGACATG 48332 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA----TGTGCCCAAATCTC 111838 |||||||| || |||| || |||| ||| | |||| |||||| || || Sbjct 48331 AAGGAGGACAGCATTGATGGTATCTACGACAC----ATTGAAAATTTGTGCCATGATTTC 48276 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTA 111897 |||| |||||||||||||| | | | || || | || | | || || || Sbjct 48275 AAAGAACGCTGGTGGTATCGGTCTCAATGTTCACAGAATCCGTGCGA-CGGGTGCTTATA 48217 Query 111898 TTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 111957 || |||||||| || | || | || ||| |||| |||||||| || || ||| || Sbjct 48216 TTGCGGGTACAAACGGAAACTCCAACGGAATTGTTCCCATGCTTCGAGTTTTCAACAACA 48157 Query 111958 CAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATC 112011 | || | ||||| | |||| ||| | |||| || || |||| |||| | Sbjct 48156 CCGCTAGATATGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCTTTCGCCATCTACC 48100 Query 112012 TTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATG 112071 |||||||||||||||| ||| | | ||||||||||| | || ||||| || | | Sbjct 48099 TTGAGCCATGGCACGCAGATGTTTTCGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGG 48040 Query 112072 AGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGA 112131 |||||| || ||| |||||||||| |||||||||||| |||||||||||||||||| Sbjct 48039 AGGAGGTTCGTGCCCGTGATCTCTTCTACGCTCTCTGGATCCCAGATCTCTTCATGAAGC 47980 Query 112132 GAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCG 112191 | ||||| ||| | ||| | | | || || || || || || | ||| Sbjct 47979 GTGTTGAAAAGAACCTTGACTGGACATTGATGTGCCCCAACGAGTGTCCTGGATTGGCCG 47920 Query 112192 ATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAA-GAAAGTCGG 112247 | | | ||||| ||||| || || | || || |||||| ||| | ||| Sbjct 47919 ACGTCTACGGTGACGAGTTCGAGGCTTTGTATGAGAAATACGAGTCTGAAGGCAAGGGTC 47860 Query 112248 GCGACTGCGACGGTG-CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGA 112306 || | || | | ||| || | ||| | |||| || || |||| || || Sbjct 47859 GCAAGAGCATCAAAGCCCAAAAGC-----TTTGGTACTCTATCCTTGAGGCTCAGACTGA 47805 Query 112307 GACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 ||| || | || | ||||||||||| || || || |||| ||||||||| |||||||| Sbjct 47804 GACCGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGTAACCAAAAGAA 47745 Query 112367 TTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AA 112424 | | ||| ||| || |||||| | || || || || | || ||| | || | Sbjct 47744 TCTCGGTACCATCCGAAGCTCCAACTTGTGCACTGAGATTGTCGA--GTACTGTGCACCA 47687 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG-A 112483 |||||| ||||| || || | ||||| | |||||||| | ||||| || | || | Sbjct 47686 GATGAGGTCGCTGTTTGCAATTTGGCATCGCTTGCTCTCCCAACATATGTTGA-CGAGAA 47628 Query 112484 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543 ||| || | ||| | |||| |||||||| || || ||| || ||| | Sbjct 47627 GACTGCCACTTATGACTTCCAAAAGCTCCACGAGGTCTGCCAAGTAGTCGTCAAGAACTT 47568 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATAT 112600 || | |||| ||| || | |||||| || |||| || | || ||| | Sbjct 47567 GAATAAGATTATCGATGTCAACTATTACCCAGTTCCTGAG---GCAAGAAAGAGCAATTT 47511 Query 112601 GAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG 112660 | ||| | || |||| ||||||||| |||||||| || |||| ||| | | ||| Sbjct 47510 CCGTCACAGACCTATTGCTCTCGGTGTTCAAGGTCTTGCTGATGCCTTCTTGGCTCTTCG 47451 Query 112661 CCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTA 112720 || | || || || ||||| ||| | | || | || || || || || || Sbjct 47450 CCTTCCTTTCGAGTCTCCAGAAGCCAAGCACCTTAACATCCAAATCTTCGAAACCATTTA 47391 Query 112721 TCACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777 ||||| ||| |||| | ||| |||||||||| | || ||||||||||||| || Sbjct 47390 CCACGCTGCT-TTGA--CTGCTTCCGTGGAGTTGGCAAAAATTCATGGTCCATATGAGAC 47334 Query 112778 CTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGA 112836 | | || || || || || |||||| | ||| |||| ||| ||||||| || | | Sbjct 47333 ATACCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACA 47276 Query 112837 CCAAGC-TTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || | | || | || |||| ||| | ||| ||| || | | || | || Sbjct 47275 CCTACCGATCTTTGGGATTGGGCTAGCT-TGAAGCAACAGATTGCTCAACACGGCATCCG 47217 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 |||||| | | | || || |||||||| ||| ||| || || | ||| || Sbjct 47216 CAACAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAGATTCTTGGTTTCAA 47157 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 113014 || ||||| || || || || | ||||| ||| || | ||| || |||||||| Sbjct 47156 CGAGTGCTTCGAGCCATATACCTCCAACATATATTCTCGACGTGTCCTTGCTGGAGAGTT 47097 Query 113015 TGTGATTGTCAACAAGCAT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAG 113072 | |||||||| ||| || | | || || || || || ||||||||| | Sbjct 47096 CCAGGTTGTCAAC--CCATGGCTTCTTAAGGATCTTGTTGATATGGGACTCTGGTCCGAT 47039 Query 113073 GATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATAT 113128 | |||||| | | ||| || ||| ||||| || || |||||| || |||| Sbjct 47038 AACATGAAGAACCGTATCATTGCTGA----CGGTGGATCAATCCAAAATGTTCCAAATAT 46983 Query 113129 TCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTC 113186 ||||| ||| || ||| | ||| || |||||||| | ||| | | | | || Sbjct 46982 TCCAGCTGATATCAAGGCTCTTTACAAGACCGTTTGGGAGATCTCACAACGTACCA--TC 46925 Query 113187 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTC 113246 | | ||||| || || |||||| |||||||||||| |||| ||||| | | Sbjct 46924 GTCCAGATGGCTGCCGACCGTGGTGCATTCATTGATCAATCTCAATCAATGAACATCCAC 46865 Query 113247 ATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGT 113306 ||| | ||||| ||| ||| || | |||||| | | |||||| |||| Sbjct 46864 ATGAAGGACCCAACCATGGGTAAGATCACCAGTATGCATTTCGCAGGCTGGAAGCTGGGT 46805 Query 113307 CTCAAAACGGGGATGTATTACCTCCGATCTAAGGC 113341 ||||| || || ||||| || ||||| ||| ||| Sbjct 46804 CTCAAGACTGGAATGTACTATCTCCGTACTATGGC 46770 >seq476 Length=308794 Score = 118 bits (130), Expect = 1e-21 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGC 102168 |||||| || || | |||||||| ||||||||| | ||| | | |||| | | Sbjct 12599 AGTTCCTTGCATCAAGAAGAAAGCCGATTGGGCTGTCCGATGGATCCAAGACAAGGAATC 12540 Query 102169 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 102228 | |||||||| | || || | || ||||| ||||||||||||||||||| ||| | Sbjct 12539 -TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 | ||| | | || | ||| | |||||||| || |||||| | ||||| |||||||| Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421 Query 102289 ACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| | ||||| ||||| ||||| |||||| Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 12389 >seq222 Length=1012068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 219/326 (67%), Gaps = 18/326 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 |||||||||||||| ||||||| ||| || | ||| || || |||||||| | | Sbjct 850493 AAACCATCCATCTCGGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCATCATTTCCACCA 850552 Query 16033 GCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 || | | ||||| | | | |||||| | |||||||| ||||||||||||| Sbjct 850553 CCAAATGAACCAGCTTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAATGAAGATA 850612 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || || ||| | | || | | |||||||||| || || | || || ||| Sbjct 850613 ATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGATCTCGAACTCTGGAAGCACCAACA 850672 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATT-----GGATGAAGGGGACATTA 16202 ||||||||||||||||| || | ||||| || | || ||| || ||| Sbjct 850673 CCAACAAACATCTCCACGAACT------CGGAACCACTAACGCTGAAGAAAGGCACACCC 850726 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 || || || || |||| || || | |||||||| ||||| || ||| | ||| Sbjct 850727 GACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGTACCGGGTGGACCAGAAAGG 850786 Query 16263 AGGGCACCTCGTGGAATCTTGGCGCC 16288 | ||| ||||| |||||||| || || Sbjct 850787 ATGGCTCCTCGGGGAATCTTAGCTCC 850812 >seq311 Length=439650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659 ||| || || || |||||| |||||||| || ||||||||||| | ||||||||||| Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957 Query 163660 TGGAGACAAAGACTTTGAGGTAAAGAGGGGGGAGCGCATCGCACAACTTGTTCTT-GAGA 163718 || || ||||| |||||||| ||| ||| || || | |||||| ||| |||| |||| Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAA-TTGGTCTTGGAGA 349016 Query 163719 GGTGTGAGACACCCGATGT 163737 | | |||||||| || Sbjct 349017 GAATCTACACACCCGAGGT 349035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738489322880