Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq104 122 1e-22 >seq104 Length=83277 Score = 122 bits (134), Expect = 1e-22 Identities = 610/962 (63%), Gaps = 21/962 (2%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 |||||| | |||||||||| || || | |||||| |||| ||| ||| | | Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAG 47696 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT- 110390 || || | ||| || || ||||||||||| || ||| ||| | ||||| || || Sbjct 47697 TACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTA 47756 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 | ||| | |||||| |||||||| || |||||| | ||| | || || || ||||| | Sbjct 47757 CTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815 Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA--CAGTTGCGTTAGCGAGACCTTCC 110508 || || || | | ||| | | ||| || | ||||| | | ||||| Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCG--ACCCTTGCCTTCA 47873 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568 |||||| || ||||| |||| || || | ||||| || || | | || Sbjct 47874 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGA 47933 Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 || || ||| || | | | ||| | || ||||| | ||||||||| || Sbjct 47934 CACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGA 47993 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 || || ||||| | || |||| || |||||| |||| |||| || | || ||||| Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 || || || | || || | | ||| | ||||||||| || || |||| |||| Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113 Query 110749 GATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 | || | |||| ||| | || | |||||| | || ||| ||||| || Sbjct 48114 GCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATT 110861 | ||||| |||| |||||| | ||| | || ||||||||| ||| | | || | Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 | |||| || ||| | || | ||| |||||||| || ||| ||| ||||| Sbjct 48231 G-CACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACA 48289 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 | | | ||| | || ||||||||||| || |||| || | || || ||||| Sbjct 48290 AATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 48349 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || | || | | || || || || ||||||||| || | || || ||| Sbjct 48350 GGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGA- 48408 Query 111042 CAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGA 111099 || ||| ||||||| |||||| || |||| || | | ||| | ||||| Sbjct 48409 -AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467 Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACA 111159 || || | ||||| ||||| | ||||| ||| || ||| | ||| ||||| | Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGG 48527 Query 111160 CGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGA 111219 || | || || ||| |||||||||| ||| |||||| | | ||||||||| Sbjct 48528 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCACGG 48587 Query 111220 TC 111221 || Sbjct 48588 TC 48589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972289451200