Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq104 122 1e-22
>seq104
Length=83277
Score = 122 bits (134), Expect = 1e-22
Identities = 610/962 (63%), Gaps = 21/962 (2%)
Strand=Plus/Plus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
|||||| | |||||||||| || || | |||||| |||| ||| ||| | |
Sbjct 47637 ACATATGTTGGGAGAGCAAGCGATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAG 47696
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT- 110390
|| || | ||| || || ||||||||||| || ||| ||| | ||||| || ||
Sbjct 47697 TACTCGACAATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTA 47756
Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450
| ||| | |||||| |||||||| || |||||| | ||| | || || || ||||| |
Sbjct 47757 CTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGC 47815
Query 110451 CTTGAGAATGGCCTTCCATACATCGGCGGCGGGGA--CAGTTGCGTTAGCGAGACCTTCC 110508
|| || || | | ||| | | ||| || | ||||| | | |||||
Sbjct 47816 CTCAAGGATAGAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCG--ACCCTTGCCTTCA 47873
Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTC 110568
|||||| || ||||| |||| || || | ||||| || || | | ||
Sbjct 47874 GACTCGTATTTCTCATACAAAGCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGA 47933
Query 110569 GCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628
|| || ||| || | | | ||| | || ||||| | ||||||||| ||
Sbjct 47934 CACTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGA 47993
Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688
|| || ||||| | || |||| || |||||| |||| |||| || | || |||||
Sbjct 47994 TCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTC 48053
Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748
|| || || | || || | | ||| | ||||||||| || || |||| ||||
Sbjct 48054 TTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAA 48113
Query 110749 GATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802
| || | |||| ||| | || | |||||| | || ||| ||||| ||
Sbjct 48114 GCACC---AGGACGCTTGTTACCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACT 48170
Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATT 110861
| ||||| |||| |||||| | ||| | || ||||||||| ||| | | || |
Sbjct 48171 CGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTC 48230
Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921
| |||| || ||| | || | ||| |||||||| || ||| ||| |||||
Sbjct 48231 G-CACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACA 48289
Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981
| | | ||| | || ||||||||||| || |||| || | || || |||||
Sbjct 48290 AATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 48349
Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041
|| || | || | | || || || || ||||||||| || | || || |||
Sbjct 48350 GGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGA- 48408
Query 111042 CAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGA 111099
|| ||| ||||||| |||||| || |||| || | | ||| | |||||
Sbjct 48409 -AGTATTTGCTGGACATCAAGTTGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGG 48467
Query 111100 ATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACA 111159
|| || | ||||| ||||| | ||||| ||| || ||| | ||| ||||| |
Sbjct 48468 ATTCCGACAGCAACGCGCATAATCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGG 48527
Query 111160 CGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGA 111219
|| | || || ||| |||||||||| ||| |||||| | | |||||||||
Sbjct 48528 CGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCGAAGTATTGGTAGTTGAAATCACGG 48587
Query 111220 TC 111221
||
Sbjct 48588 TC 48589
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588972289451200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |