Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq104 298 6e-76 seq476 120 4e-22 seq222 114 2e-20 seq311 91.5 2e-13 >seq104 Length=83277 Score = 298 bits (330), Expect = 6e-76 Identities = 1174/1820 (65%), Gaps = 45/1820 (2%) Strand=Plus/Plus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATG 105639 ||| ||| |||||||||||||| || |||||||| || | ||||| || | | | ||| Sbjct 46770 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCCAGCTTCCA-GCCTGCGAAATG 46828 Query 105640 CATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTG 105699 |||| | || ||| ||| ||||| | |||| | ||||| |||| || Sbjct 46829 CATACTGGTGATCTTACCCATGGTTGGGTCCTTCATGTGGATGTTCATTGATTGAGATTG 46888 Query 105700 GTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCC 105757 |||||||| |||||| | || ||||| | | || | | | | ||| | ||| Sbjct 46889 ATCAATGAATGCACCACGGTCGGCAGCCATCTGGACGA--TGGTACGTTGTGAGATCTCC 46946 Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817 || || || ||| ||| |||||||||| |||| |||| || | |||||| ||||| Sbjct 46947 CAAACGGTCTTGTAAAGAGCCTTGATATCAGCTGGAATATTTGGAACATTTTGGATTGAT 47006 Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877 || || | | || | | |||||| | | |||||| || || || | ||| Sbjct 47007 CCACCGTCAGCAATGATACGGTTCTTCATGTTATCGGACCAGAGTCCCATATCAACAAGA 47066 Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGAT 105935 || || | || ||| |||||||| | |||||||| || ||| | || || Sbjct 47067 TCCTTAAGAAGCCATGG--GTTGACAACCTGGAACTCTCCAGCAAGGACACGTCGAGAAT 47124 Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995 | ||||| | || || || || ||||| || || ||| | || || ||| || Sbjct 47125 ATATGTTGGAGGTATATGGCTCGAAGCACTCGTTGAAACCAAGAATCTGACTGGTACTGG 47184 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055 | |||||||| || || | | | |||||| || | || | || || ||| || Sbjct 47185 CAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATGCCGTGTTGAGCAATCTGTTGCT 47244 Query 106056 TGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAG 106113 | | | |||| || | || | | ||| | || ||||||| ||| |||| || Sbjct 47245 TCAAGCTAGCCCAATCCCAAA-GATCGGTAGGTGTAACAC-CCCACATGTCATATTGGAG 47302 Query 106114 CACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAA 106173 | | || | ||| | || || || | |||||||||| | ||| || || ||||| Sbjct 47303 CTCGCCCTTGGAGGCAGGTGAGCCTTGGTATGTCTCATATGGACCATGAATTTTTGCCAA 47362 Query 106174 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 106233 || | || || | ||||| || |||||||| ||||| | || | | Sbjct 47363 CTCCACGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTAAGGTG 47422 Query 106234 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTT 106292 ||||||||| || || || | | || | | | | || |||| || ||||||| Sbjct 47423 CTTGGCTTCTGGAGACTCGAAAG-GAAGGCGAAGAGCCAAGAAGGCATCAGCAAGACCTT 47481 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGG 106349 ||||||| | | ||||||||||||| || | ||| ||||| || |||| || | Sbjct 47482 GAACACCGAGAGCAATAGGTCTGTGACGGAAATTGCTCTTTCTTGC---CTCAGGAACTG 47538 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCA 106408 | ||| | || || || | || | || ||| || | ||| | || || Sbjct 47539 GGTAATAGTTGACATCGATAATCTTATTCAAGTTCTTGACGACTA-CTTGGCAGACCTCG 47597 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 || || |||| | ||| ||||| ||||| || | ||||| |||| || || | Sbjct 47598 TGGAGCTTTTGGAAGTCATAAGTGGCAGTCTTCTCGTCAACATATGTTGGGAGAGCAAGC 47657 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAC 106528 |||||||||||||||||||| |||||| | |||||| | ||| || || ||| Sbjct 47658 GATGCCAAATTGCAAACAGCGACCTCATCTGGTGCACAGTACTCGACAATCTCAGTGCAC 47717 Query 106529 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCC 106588 |||||||| || || || || | ||||||||||||||||||| |||||| |||||| Sbjct 47718 AAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGGTTGCAAGCATCC 47777 Query 106589 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACA 106648 ||||| |||||| | || | || ||||| ||||| | || || || | | ||| | Sbjct 47778 TTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATAGAGTACCAAAGC 47837 Query 106649 TCGGCGGC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGG 106705 | ||| || | | | || | ||| | || || | |||||| || || | Sbjct 47838 TTTTGGGCTTTGATGCTCTTGC---GACCCTTGCCTTCAGACTCGTATTTCTCATACAAA 47894 Query 106706 GCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGA 106765 || || ||||| ||||| |||||| | || || || || || || | | Sbjct 47895 GCCTCGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACACTCGTTGGGGCACATCAAT 47954 Query 106766 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAA 106825 | ||| | | || ||||| ||||||||||| || ||||| ||||| || | | Sbjct 47955 GTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTAG 48014 Query 106826 AAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCC 106885 |||||||| | ||| |||| || | || ||||| ||| | ||||||||||| Sbjct 48015 AAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCG 48074 Query 106886 ATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------ 106939 | | ||| ||||||||||||||||| |||| |||| || || ||||| Sbjct 48075 AAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTA 48131 Query 106940 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 106999 ||| |||||| ||||| | || ||| ||| || || |||||||| |||| ||| || Sbjct 48132 CCACCTTGATCAACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCG 48191 Query 107000 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 107059 | || | || ||||| ||| |||| || | || | | || | | Sbjct 48192 TTGGAGTTTCCGTTTGTACCCGCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTG 48251 Query 107060 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 107119 | || ||||| ||||| |||||| || ||||| | | || | |||||| Sbjct 48252 AGACCGATACCACCAGCGTTCTTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATA 48311 Query 107120 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 107179 || | || ||||||||| || ||||||||||||| || | || | |||| Sbjct 48312 CCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCAGGATGAAAGTTGTGCCTGTGGT 48371 Query 107180 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGT 107237 |||||||| |||||| || || | ||||| |||| || ||| ||||||| || Sbjct 48372 GTACCAGCTGCGAAGAGTGTGGGGGAGGCGTGGGTGAA-GTA-TTTGCTGGACATCAAGT 48429 Query 107238 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAA 107297 ||| ||||| | | ||| || || || || |||||||| |||| || || ||||||| Sbjct 48430 TGTAGGTCTCGATGGCAGCCTCGATATCCTCGCCGTGGATTCCGACAGCAACGCGCATAA 48489 Query 107298 ACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCA 107356 ||| | ||| || ||| || |||||||||| || | ||||| | || ||| Sbjct 48490 TCATATGTTGTGGACGTTCACAGATCTTGCCATCGAGGCGGAGGAGATATGATC-GCTCG 48548 Query 107357 AGGGTTTTGAGACCAAAGTA 107376 ||||| |||| ||| ||||| Sbjct 48549 AGGGTCTTGAAACCGAAGTA 48568 >seq476 Length=308794 Score = 120 bits (132), Expect = 4e-22 Identities = 296/446 (66%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 116993 CAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAA 117052 |||| |||||||| |||||||| ||||| || |||| ||||| ||||||||||| | Sbjct 12097 CAACACGCTTCTCGAAGAAGTTAGTCTTTCCTGCAAGAGAGATGTTCTCCATAAAGTCGA 12156 Query 117053 ATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACGATCCGAC 117111 |||| || | || ||| | || || | |||||||||||| | Sbjct 12157 ATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGAGAAAGGAGGAGACGATCGGCG 12215 Query 117112 ACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGGAGT 117171 || |||||||||| | |||| | | |||||| || | ||| ||| || || Sbjct 12216 ACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCCAGAAGAGCACAAGGAAGA 12275 Query 117172 GCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTT 117231 || || | |||| ||| |||||||||||| ||||| | | || ||| |||| | | Sbjct 12276 GCCTCGGTCAAGAACTCTTGCTCAATCTCAACAGCCTCGGTGATGACGGCCTGGACTGCT 12335 Query 117232 TCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA----AACTCCTGGTG 117287 | | | || | || ||| |||||| | |||| || || ||| Sbjct 12336 GCCTTGCTTGGGCGATGCTTCAAGTGAGAGAAGAG----AAGGCATGCGAAGTCGGTGTG 12391 Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347 |||||||||||| ||||| || | || || |||||| || || | |||||| || || Sbjct 12392 GAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCCACG 12451 Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407 |||||||||||| | || | | ||| || || ||||||||||||||| ||| || Sbjct 12452 CTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCACTGAAGAAGATACCCTCAACAGCAGC 12511 Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||| |||| ||| || | || |||| Sbjct 12512 AAAGGCAACAAGACGTTGAGCAAAGG 12537 >seq222 Length=1012068 Score = 114 bits (126), Expect = 2e-20 Identities = 228/334 (68%), Gaps = 18/334 (5%) Strand=Plus/Plus Query 9274 CATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCAT 9333 || ||| |||||||||||||| ||||||| || || | ||| || || ||||||| Sbjct 850485 CAGTATTGAAACCATCCATCTCGGTCAAAATCTGATTGAGAGTAGCCTCTCGCTCATCAT 850544 Query 9334 T--CGCTGGCATACCA-CCAGCACTGCGTTG---CTTTCCCACGGCATCAATCTCATCAA 9387 | | | || | | ||||| | | | |||||| | |||||||| ||||||| Sbjct 850545 TTCCACCACCAAATGAACCAGCTTTTCCACGAGCCTTTCCAATTGCATCAATTTCATCAA 850604 Query 9388 TGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG 9447 |||||| |||||| || ||| | | ||| ||| |||||||||| ||||| || | Sbjct 850605 TGAAGATAATACAAGGGGTATTCTTTCTGGCCATTGCAAAGAGATCTCGAACTCTGGAAG 850664 Query 9448 CGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA-CATT-----GGATGAAGG 9501 | || |||||||||||||||||||| || | ||||| || | || ||| | Sbjct 850665 CACCAACACCAACAAACATCTCCACGAACT------CGGAACCACTAACGCTGAAGAAAG 850718 Query 9502 GGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTAC 9561 | ||| || || || || |||| || || | |||||||| ||||| || || Sbjct 850719 GCACACCCGACTCTCCGGCTGTGGCCTTTGCTAGTAAGGTCTTACCAGTACCGGGTGGAC 850778 Query 9562 CCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 | | |||| ||| || || |||||||| || || Sbjct 850779 CAGAAAGGATGGCTCCTCGGGGAATCTTAGCTCC 850812 >seq311 Length=439650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 155097 TGGTGCGGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCA 155156 ||| || || || |||||| ||||||| || ||||||||||| | ||||||||||| Sbjct 348898 TGGCGCAGGCGTAATTGATGCCGACTACCGTGGCCAAGTCAAAGTCCTCCTCTTCAATCA 348957 Query 155157 CGGAGACAAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAG 155214 ||| || ||||| |||||||| ||| | || ||||| | |||||| | ||| | ||| Sbjct 348958 CGGCGAGAAAGATTTTGAGGTCAAGGAGGGAGATCGTGTAGCACAATTGGTCTTGGAG 349015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977083120960