Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq504 131 2e-25 >seq504 Length=220221 Score = 131 bits (144), Expect = 2e-25 Identities = 186/257 (72%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 || ||||||||||| |||||||| |||||| ||||| | | ||| | ||| | || Sbjct 95899 ATCATGATTACATACCCATCTACCTTTGGTGTCTTTGAGCCTGAAGTCAAGGCAGTT-TG 95957 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 || | ||||| ||| |||| || || || || | |||||||| ||| | || || || Sbjct 95958 CGAGTTGGTTCACGAGCATGGAGGACAAGTTTACATGGATGGTGCGAATATGAACGCTCA 96017 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | ||| |||| ||| || ||||| |||||||| ||| | || || Sbjct 96018 AATTGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTCTGTCATCTCAACCTTCACAA 96077 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA- 159784 |||||| |||||||| ||||| ||||||||||| || || ||||| |||||||| ||| Sbjct 96078 GACATTTTGTATTCCTCATGGGGGTGGAGGTCCAGGAGTTGGTCCAATTGGTGT--CAAG 96135 Query 159785 -AACATCTCACACCATT 159800 |||||| ||||||| Sbjct 96136 TCACATCTTGCACCATT 96152 Score = 123 bits (136), Expect = 3e-23 Identities = 186/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||| | || ||| ||||| | ||||| || |||||||||||||| ||||| || | Sbjct 94720 CAACGATTCGGTGTTCCTTTTGGATATGGTGGTCCTCATGCTGCTTTCTTCGCCGTTAGC 94779 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGA---ATTGTAGGTCAGTCAGTAGATAGCGAA 158559 ||||| |||||| | || || || || | |||| || | || |||||| Sbjct 94780 GACAAATATAAGCGGAAAATCCCAGGACGCCTCATTGGAGTT---TCGAAAGATAGACTT 94836 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || | || || ||||| ||||| ||||| ||||||| |||||| ||||||| || Sbjct 94837 GGAGACAAGGCGATGAGATTGGCACTTCAGACCCGAGAGCAACATATCCGAAGAGAAAAG 94896 Query 158620 GCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCA 158679 ||||| || || | ||||||||||| ||||| || || |||||| || |||||||| Sbjct 94897 GCAACTAGCAATGTATGCACAGCACAGGCACTACTTGCAAATATGAGTGCTTTCTATGCT 94956 Query 158680 GCATATCATGGTGCAGATGGACT 158702 | ||||| || |||| || || Sbjct 94957 GTCTATCACGGCCCAGAGGGTCT 94979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047495277440