Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq18 138 3e-27
seq46 93.3 9e-14
>seq18
Length=186891
Score = 138 bits (152), Expect = 3e-27
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| |||||| ||| |||||||| ||||||||| || || | ||||| || | ||
Sbjct 167653 GTGCAGAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGTGTACGGCCATCCTCCAATTG 167594
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || | ||| ||||||||||| ||||| || || || || || || ||
Sbjct 167593 CTTGCCGGCGAAAATCAATCGCTGTTGGTCTGGTGGAATACCCTCCTTATCCTGGATCTT 167534
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| |||||| || ||||| ||||||||| || ||||| | |||| ||||| || ||
Sbjct 167533 TGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTTGCCCGT 167474
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || | ||||||
Sbjct 167473 CAAAGTCTTGACAAATATTTGCAT 167450
Score = 132 bits (146), Expect = 1e-25
Identities = 152/203 (75%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| ||||| |||||||| ||||| ||||| || | ||| || | || || ||
Sbjct 167203 AACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 167144
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| |||||||| || ||||| || ||||||||||| || || ||||| || ||||||||
Sbjct 167143 AAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCCCTCCTTGTCTTG 167084
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGT 195107
|| || ||||||||| || ||||| || ||| ||| || || ||||| | ||
Sbjct 167083 GATCTTCGACTTGACGTTGTCGATGGTATCGCTCGA---TTCGACCTCGAGGGTGATAGT 167027
Query 195108 CTTTCCTGTCAAAGTTTTTACGA 195130
||| || ||||| || || ||||
Sbjct 167026 CTTGCCGGTCAAGGTCTTGACGA 167004
Score = 127 bits (140), Expect = 5e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| |||||||| || || || |||||||| | ||||| | || || ||||||||
Sbjct 166913 GTGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGAGAGAGTGCGTCCGTCCTCGAGCTG 166854
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | ||||| || ||||| |||||||| || ||||| || || ||
Sbjct 166853 CTTGCCAGCAAAGATCAAACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 166794
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || || ||||| || ||||| |||||||| | ||||| || ||
Sbjct 166793 GCTCTTGACGTTGTCGATAGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTACCGGT 166734
>seq46
Length=702932
Score = 93.3 bits (102), Expect = 9e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
||||| || ||||| || | |||||| | ||||| || || ||||| || ||||||||
Sbjct 219610 TTTTGGATGTTGTAGTCTGAAAGAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 219669
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||||||||| || ||||| || || ||||| || || || ||| || || ||
Sbjct 219670 AAACGTTGTTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTCGACTTTACATTATCG 219729
Query 195073 ATGGTGTCCGA 195083
||||| |||||
Sbjct 219730 ATGGTATCCGA 219740
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109474435522568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |