Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq76 125 6e-23 seq485 107 2e-17 seq453 96.9 3e-14 seq454 86.0 5e-11 >seq76 Length=110257 Score = 125 bits (138), Expect = 6e-23 Identities = 384/591 (65%), Gaps = 2/591 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| | | | ||| | | Sbjct 93265 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 93206 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| ||||| || || || ||| |||| || || || | ||| | ||||| Sbjct 93205 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 93146 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | || ||||| ||||| | |||| | | || || |||| Sbjct 93145 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 93086 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || || ||||| || ||| ||| || || | || ||||| Sbjct 93085 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTCCAGGCT 93026 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || |||||||| | |||||| | | | | |||||| || | || | | Sbjct 93025 GACATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGA-GAT 92967 Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | || || || |||||||| |||| || || ||| | || | Sbjct 92966 TGAGTTCAAGGGCGAGAAGAAGCAGTTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 92907 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || ||| |||| |||| | || | | || || | || Sbjct 92906 CAAGATGAGAGAGACTGCCGAGGCTTACCTTGGCGGAACCGTCAACAACGCCGTCGTTAC 92847 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| ||||||||||| | || |||||||||||||| || || ||||| || || || Sbjct 92846 TGTCCCAGCATATTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTTTAATCGC 92787 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || |||||||| || || ||||| || ||||| ||||| || ||||||| || || Sbjct 92786 TGGTCTCAATGTTCTCCGAATCATCAACGAGCCTACCGCTGCAGCCATTGCATACGGTCT 92727 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | ||| || | ||||| |||||||||||| ||| || Sbjct 92726 CGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 92676 >seq485 Length=272343 Score = 107 bits (118), Expect = 2e-17 Identities = 117/154 (76%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | || || |||||||| || || || |||||||||||||| || || |||| Sbjct 127391 ATGCCGTTGTCACAGTCCCAGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 127450 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || ||||| ||||| | | |||| || || ||||||||||| | Sbjct 127451 CTGGTCAAATTGCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGC 127510 Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551 ||||||| ||||| || || || | || ||||| Sbjct 127511 TTGCATACGGACTCGAGAAGGATGAGGA-CAAGA 127543 >seq453 Length=375474 Score = 96.9 bits (106), Expect = 3e-14 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| || | | ||||| || ||||| ||||| || || || ||| || Sbjct 78103 GTTGGGCAAGAAGGTTGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 78044 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||||| || || ||||| || ||||| || ||||||||||| || || ||||| Sbjct 78043 GCGTCAAGCCACCAAGGATGCAGGTGCCATTGCCGGTCTTAATGTTCTCCGAATCATCAA 77984 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||| ||||| | ||||| || || Sbjct 77983 CGAGCCAACTGCCGCTGCTATCGCATACGGTCT 77951 >seq454 Length=373842 Score = 86.0 bits (94), Expect = 5e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 549985 CAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAA 550044 |||| ||| ||| ||||| |||||||||||||| || |||||| ||||| ||| || Sbjct 242170 CAAAATAGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAA 242229 Query 550045 TGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTC 550104 ||| || || ||||| | | || || ||||| |||||| ||| ||||| || || | Sbjct 242230 TGGAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATACGTCGC 242289 Query 550105 TTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164 || || || ||| ||||| || || ||||| || | || || |||| || || Sbjct 242290 ATTTACCGACGAGGAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAACCC 242349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029269346206960