Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq76 125 6e-23
seq485 107 2e-17
seq453 96.9 3e-14
seq454 86.0 5e-11
>seq76
Length=110257
Score = 125 bits (138), Expect = 6e-23
Identities = 384/591 (65%), Gaps = 2/591 (0%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| | | | ||| | |
Sbjct 93265 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 93206
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|||| ||||| ||||| || || || ||| |||| || || || | ||| | |||||
Sbjct 93205 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 93146
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | || ||||| ||||| | |||| | | || || ||||
Sbjct 93145 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 93086
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | || || || || ||||| || ||| ||| || || | || |||||
Sbjct 93085 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGACCAGGAAGTCCAGGCT 93026
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
|| |||||||| | |||||| | | | | |||||| || | || | |
Sbjct 93025 GACATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGA-GAT 92967
Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| |||| | || || || |||||||| |||| || || ||| | || |
Sbjct 92966 TGAGTTCAAGGGCGAGAAGAAGCAGTTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 92907
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || ||| |||| |||| | || | | || || | ||
Sbjct 92906 CAAGATGAGAGAGACTGCCGAGGCTTACCTTGGCGGAACCGTCAACAACGCCGTCGTTAC 92847
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
||| ||||||||||| | || |||||||||||||| || || ||||| || || ||
Sbjct 92846 TGTCCCAGCATATTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTTTAATCGC 92787
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| || |||||||| || || ||||| || ||||| ||||| || ||||||| || ||
Sbjct 92786 TGGTCTCAATGTTCTCCGAATCATCAACGAGCCTACCGCTGCAGCCATTGCATACGGTCT 92727
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | ||| || | ||||| |||||||||||| ||| ||
Sbjct 92726 CGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 92676
>seq485
Length=272343
Score = 107 bits (118), Expect = 2e-17
Identities = 117/154 (76%), Gaps = 1/154 (1%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | || || |||||||| || || || |||||||||||||| || || ||||
Sbjct 127391 ATGCCGTTGTCACAGTCCCAGCATACTTCAACGATTCACAACGTCAAGCCACCAAGGATG 127450
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
|||| | ||||| || ||||| ||||| | | |||| || || ||||||||||| |
Sbjct 127451 CTGGTCAAATTGCCGGTCTTAACGTTCTGAGAGTGGTCAACGAGCCAACTGCTGCTGCGC 127510
Query 550518 TTGCATATGGACTTGATAAACATAATGATCAAGA 550551
||||||| ||||| || || || | || |||||
Sbjct 127511 TTGCATACGGACTCGAGAAGGATGAGGA-CAAGA 127543
>seq453
Length=375474
Score = 96.9 bits (106), Expect = 3e-14
Identities = 114/153 (75%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| || | | ||||| || ||||| ||||| || || || ||| ||
Sbjct 78103 GTTGGGCAAGAAGGTTGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 78044
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||||| || || ||||| || ||||| || ||||||||||| || || |||||
Sbjct 78043 GCGTCAAGCCACCAAGGATGCAGGTGCCATTGCCGGTCTTAATGTTCTCCGAATCATCAA 77984
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || ||||| ||||| | ||||| || ||
Sbjct 77983 CGAGCCAACTGCCGCTGCTATCGCATACGGTCT 77951
>seq454
Length=373842
Score = 86.0 bits (94), Expect = 5e-11
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 549985 CAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAA 550044
|||| ||| ||| ||||| |||||||||||||| || |||||| ||||| ||| ||
Sbjct 242170 CAAAATAGTTATCGGTATCGATTTAGGAACCACCTACTCTTGTGTGGGTGTGATGCAGAA 242229
Query 550045 TGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTC 550104
||| || || ||||| | | || || ||||| |||||| ||| ||||| || || |
Sbjct 242230 TGGAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATACGTCGC 242289
Query 550105 TTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCC 550164
|| || || ||| ||||| || || ||||| || | || || |||| || ||
Sbjct 242290 ATTTACCGACGAGGAAAGATTAGTAGGAGACGCAGCCAAGAACCAGGCTGCTGGAAACCC 242349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029269346206960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |