Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq476 105 1e-17 >seq476 Length=308794 Score = 105 bits (116), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | ||| || ||||| |||| | || || || ||| ||| | | ||||||||| Sbjct 12367 AGAGAAGGCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGA 12426 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||||||| ||||| || | || || | |||||| || | |||||||||||| Sbjct 12427 AGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGAGGCGAAAGAGCCAC 12486 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 ||||||||| ||||| || || || || || || | | | || | || | || Sbjct 12487 TGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGATTCCT 12546 Query 48303 TGTCTGAGATCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 ||||| |||||| ||| | ||||| || || |||||||||||||| || Sbjct 12547 TGTCTTGGATCCATCGGACA--GCCCAATCGGCTTTCTTCTTGATGCAAGG 12595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526931343360