Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq104 181 2e-40 seq476 107 4e-18 >seq104 Length=83277 Score = 181 bits (200), Expect = 2e-40 Identities = 501/753 (67%), Gaps = 35/753 (5%) Strand=Plus/Plus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 ||||| || || | |||| || |||||| || || | || || ||| ||| || Sbjct 47706 ATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGG 47765 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||| |||||||| ||||| || || || ||||| ||||||| | || || Sbjct 47766 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATA 47825 Query 221879 TTGTCCCAGAGTTCTCTGGC------GCTCAC-CGTCCTCTTGACTGCACCCTCGGTCTT 221931 || ||| || | | ||| |||| || || |||| || || |||| || Sbjct 47826 GAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACC-CTTGCCTTCAGACTCGTATTT 47884 Query 221932 TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991 |||||| | ||| | | |||| |||||||| | ||| ||| || ||||| Sbjct 47885 CTCATAC-------AAAGCCT--CGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935 Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051 | | ||| ||||||| |||||| ||| | || || | || ||||||||| || Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATC 47995 Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111 |||||||| || || | |||||||| | || || ||||||| |||| ||| || Sbjct 47996 TGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 48055 Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171 | ||||| | ||||| |||| || |||||||| ||||| || |||| ||| | ||| Sbjct 48056 TCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGC 48115 Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGA 222229 || || |||||||| ||||| ||||| || || ||| | | | |||||| | ||| Sbjct 48116 ACCAGGACGCTTGTTACCACCTTGATCAAC-ATA-TCTAGCGGTGTTGTTGAAAACTCGA 48173 Query 222230 AGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCC 222289 || | || || | ||||||||| ||||| || ||| ||| || ||||| || | Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACC--CGTCG 48231 Query 222290 CTCAGGTTACTGGCAGACATG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345 | | | || ||| | |||| ||||||||||| |||| || || |||||||| || Sbjct 48232 CACGGATT-CTGTGA-ACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACA 48289 Query 222346 GCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACA 222405 | || | ||||| ||| || || || ||||||||| | || | || || || Sbjct 48290 AATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 48349 Query 222406 AGACGACATCTGAG-ATTTGGTGGAACAG--GCGTTAAACAGCGTGGGACTGGCGTGTGT 222462 || || | || | | ||||| | ||| ||| || || ||||| |||||| || Sbjct 48350 GGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCG---AAGAGTGTGGGGGAGGCGTGGGT 48406 Query 222463 AAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||||| || ||||||| | ||| ||||| Sbjct 48407 GAAGTATTTGCTGGACATCAAGTTGTAGGTCTC 48439 >seq476 Length=308794 Score = 107 bits (118), Expect = 4e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924 |||| |||| | || || || |||||||||||||| ||||| ||||| ||||| || | Sbjct 12540 CTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481 Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984 | || || ||||||||||| | ||| || || |||| | || || ||| |||| Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421 Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||||| | ||| | | || ||||||||||||| || || || ||||| |||| Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCT 12367 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || ||| |||||| ||||||||||||||||| Sbjct 12984 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 12925 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 ||||||| | ||| ||| || |||| | | | || || | | ||| || Sbjct 12924 TCCAAGGATCTCCACGATTGGAACAACAAGCTCAA--CGATGATGAACGTTACTTTATCT 12867 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || |||||||| || || || |||||||| || |||| Sbjct 12866 CCCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTCGAGC 12807 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 | |||| ||| ||||| || | |||||| | |||||||||||||| || Sbjct 12806 GCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 12752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838948277760