Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq104 181 2e-40
seq476 107 4e-18
>seq104
Length=83277
Score = 181 bits (200), Expect = 2e-40
Identities = 501/753 (67%), Gaps = 35/753 (5%)
Strand=Plus/Plus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
||||| || || | |||| || |||||| || || | || || ||| ||| ||
Sbjct 47706 ATCTCAGTGCACAAGTTGGAGCTTCGGATGGTACCGAGATTCTTTTGGTTACTCTTTCGG 47765
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||| ||| |||||||| ||||| || || || ||||| ||||||| | || ||
Sbjct 47766 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCGGTCTCAGTCTGAGCCTCAAGGATA 47825
Query 221879 TTGTCCCAGAGTTCTCTGGC------GCTCAC-CGTCCTCTTGACTGCACCCTCGGTCTT 221931
|| ||| || | | ||| |||| || || |||| || || |||| ||
Sbjct 47826 GAGTACCAAAGCTTTTGGGCTTTGATGCTCTTGCGACC-CTTGCCTTCAGACTCGTATTT 47884
Query 221932 TTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACA 221991
|||||| | ||| | | |||| |||||||| | ||| ||| || |||||
Sbjct 47885 CTCATAC-------AAAGCCT--CGAACTCGTCACCGTAGACGTCGGCCAATCCAGGACA 47935
Query 221992 CCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTC 222051
| | ||| ||||||| |||||| ||| | || || | || ||||||||| ||
Sbjct 47936 CTCGTTGGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATC 47995
Query 222052 CGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTT 222111
|||||||| || || | |||||||| | || || ||||||| |||| ||| ||
Sbjct 47996 TGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTT 48055
Query 222112 CCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGC 222171
| ||||| | ||||| |||| || |||||||| ||||| || |||| ||| | |||
Sbjct 48056 TCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCATGGCTCAAGGTAGATGGCGAAAGC 48115
Query 222172 GCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTC-CAGAGC-GTTGAAGATGCGA 222229
|| || |||||||| ||||| ||||| || || ||| | | | |||||| | |||
Sbjct 48116 ACCAGGACGCTTGTTACCACCTTGATCAAC-ATA-TCTAGCGGTGTTGTTGAAAACTCGA 48173
Query 222230 AGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCC 222289
|| | || || | ||||||||| ||||| || ||| ||| || ||||| || |
Sbjct 48174 AGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCCGCAATATAAGCACC--CGTCG 48231
Query 222290 CTCAGGTTACTGGCAGACATG----CCGATACCACCGGCGTGTTTCGAGATCATGGCGCA 222345
| | | || ||| | |||| ||||||||||| |||| || || |||||||| ||
Sbjct 48232 CACGGATT-CTGTGA-ACATTGAGACCGATACCACCAGCGTTCTTTGAAATCATGGCACA 48289
Query 222346 GCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACA 222405
| || | ||||| ||| || || || ||||||||| | || | || || ||
Sbjct 48290 AATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATAAGGAAGCA 48349
Query 222406 AGACGACATCTGAG-ATTTGGTGGAACAG--GCGTTAAACAGCGTGGGACTGGCGTGTGT 222462
|| || | || | | ||||| | ||| ||| || || ||||| |||||| ||
Sbjct 48350 GGATGAAAGTTGTGCCTGTGGTGTACCAGCTGCG---AAGAGTGTGGGGGAGGCGTGGGT 48406
Query 222463 AAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||||| || ||||||| | ||| |||||
Sbjct 48407 GAAGTATTTGCTGGACATCAAGTTGTAGGTCTC 48439
>seq476
Length=308794
Score = 107 bits (118), Expect = 4e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 25865 CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTT 25924
|||| |||| | || || || |||||||||||||| ||||| ||||| ||||| || |
Sbjct 12540 CTACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGCT 12481
Query 25925 CGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCA 25984
| || || ||||||||||| | ||| || || |||| | || || ||| ||||
Sbjct 12480 CTTTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCA 12421
Query 25985 ACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
||||| | ||| | | || ||||||||||||| || || || ||||| ||||
Sbjct 12420 ACGAGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCT 12367
Score = 96.9 bits (106), Expect = 6e-15
Identities = 163/235 (69%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| || ||| |||||| |||||||||||||||||
Sbjct 12984 ATCTGGCAAATGTACAAGAAGGCCGAAGCTTCATTCTGGACTGCCGAAGAGATTGATCTA 12925
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
||||||| | ||| ||| || |||| | | | || || | | ||| ||
Sbjct 12924 TCCAAGGATCTCCACGATTGGAACAACAAGCTCAA--CGATGATGAACGTTACTTTATCT 12867
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| | || ||||| || |||||||| || || || |||||||| || ||||
Sbjct 12866 CCCACGTCCTCGCTTTCTTCGCTGCCTCTGACGGAATTGTTAACGAGAACCTCCTCGAGC 12807
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
| |||| ||| ||||| || | |||||| | |||||||||||||| ||
Sbjct 12806 GCTTCAGCAGTGAAGTCCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAAT 12752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928838948277760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |