Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq18 82.4 6e-11
>seq18
Length=186891
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/211 (69%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||||||||| || || || ||||| || || ||||| ||| || ||||
Sbjct 167450 ATGCAAATATTTGTCAAGACTTTGACGGGCAAGACTATTACATTGGAAGTTGAGTCTTCG 167509
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || | | || ||||| ||| ||| || || ||||| | || ||| |||
Sbjct 167510 GACACAATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGACCAA 167569
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731
||| || | || || || ||||| |||||||| ||| | | ||| | |||||| |
Sbjct 167570 CAGCGATTGATTTTCGCCGGCAAGCAATTGGAGGATGGCCGTACACTCAG--CGATTACA 167627
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||||||||| || ||||||||| ||||
Sbjct 167628 ACATTCAAAAGGAGAGCACTCTGCACTTGGT 167658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425402186951016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |