Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq76 122 6e-22 seq454 91.5 1e-12 seq18 86.0 4e-11 >seq76 Length=110257 Score = 122 bits (134), Expect = 6e-22 Identities = 388/595 (65%), Gaps = 10/595 (2%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | ||||| || ||| ||||||| | | | | ||| | | Sbjct 93265 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 93206 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 | || || || ||||| ||||| || || |||| || || || | ||| | || || Sbjct 93205 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 93146 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| || |||||||| || || | |||| || || || | || Sbjct 93145 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 93086 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAAT 474566 || | || || || || | ||||| || || || || | || ||| ||||| Sbjct 93085 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGA--CCAGGAAGTCCAGG 93028 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGA 474624 |||| ||| || | ||||| | || | | |||||| || ||| | ||| Sbjct 93027 CTGACATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGAGA 92968 Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684 | | || | || || | || || || |||| ||| |||| ||||| ||| | || Sbjct 92967 TTGAGTTCAAG--GGCGAGAAGAAGCAGTTCACACCAGAAGAAATCTCTTCCATGATCTT 92910 Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | ||| |||| | | || || ||| | || ||||| | || | | || || Sbjct 92909 GGTCAAGATGAGAGAGACTGCCGAGG-CTTACCTTGGCGGAACCGTCAACAACGCCGTCG 92851 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| ||||||||||| | ||||| ||||||||||| || || ||||| || || Sbjct 92850 TTACTGTCCCAGCATATTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTTTAA 92791 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || ||||| |||||| | || || || || || || || || || || |||| || | Sbjct 92790 TCGCTGGTCTCAATGTTCTCCGAATCATCAACGAGCCTACCGCTGCAGCCATTGCATACG 92731 Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 |||| || ||||| ||| || ||||||| | ||||||||| ||| || Sbjct 92730 GTCTCGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 92676 >seq454 Length=373842 Score = 91.5 bits (100), Expect = 1e-12 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 ||||| ||||||| || || |||| | |||||||| |||||| | || |||| || Sbjct 243528 ATCCAGGTCTTTGAGGGAGAGAGAACTATGACTAAAGACAATAACCAGCTCGGAAAGTTC 243587 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | ||| ||||| || ||||| || ||||||||||||||||||| || |||| || Sbjct 243588 GAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATTGAGGTCTCTTTCGAG 243647 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAA 476200 |||| || || || || | || ||||| || | || || || |||| | Sbjct 243648 CTTGACGCCAACGGAATCTTAAAGGTTACCGCCGGAGACAAGGGTACAGGAAAGACCGAG 243707 Query 476201 AATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTT 476260 ||| || || || ||| || || | | ||| |||| | ||| | ||||||||| Sbjct 243708 TCTATCACCATCACCAACGATAAGGGACGTCTCACTCAAGAGGAGATTGACCGTATGGTT 243767 Query 476261 GATGAAGC 476268 || ||||| Sbjct 243768 GAGGAAGC 243775 >seq18 Length=186891 Score = 86.0 bits (94), Expect = 4e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | || || ||| ||||| || || || || | || || Sbjct 167215 ACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGT 167156 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || ||||||||||| |||||||| || ||||||||||| || || || || || Sbjct 167155 GCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCC 167096 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| ||||| || || ||||| | | || || Sbjct 167095 CTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCGAG 167036 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| ||||| || ||||| | ||||| |||| Sbjct 167035 GGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268157580994592