Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015-
10-27] 504 sequences; 61,124,938 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq76 122 6e-22
seq454 91.5 1e-12
seq18 86.0 4e-11
>seq76
Length=110257
Score = 122 bits (134), Expect = 6e-22
Identities = 388/595 (65%), Gaps = 10/595 (2%)
Strand=Plus/Minus
Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388
|| || ||||| ||| | ||||| || ||| ||||||| | | | | ||| | |
Sbjct 93265 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATCTACCGTGATGATCGA 93206
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
| || || || ||||| ||||| || || |||| || || || | ||| | || ||
Sbjct 93205 ATTGAGATTATCGCCAACGACCAGGGAAACCGAACCACCCCTTCCTTCGTTGCCTTCACA 93146
Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508
|| || || | ||| || |||||||| || || | |||| || || || | ||
Sbjct 93145 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 93086
Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAAT 474566
|| | || || || || | ||||| || || || || | || ||| |||||
Sbjct 93085 ACAGTCTTCGACGCAAAGCGTTTGATCGGACGAAAGTTCGCAGA--CCAGGAAGTCCAGG 93028
Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGA 474624
|||| ||| || | ||||| | || | | |||||| || ||| | |||
Sbjct 93027 CTGACATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGAGA 92968
Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTT 474684
| | || | || || | || || || |||| ||| |||| ||||| ||| | ||
Sbjct 92967 TTGAGTTCAAG--GGCGAGAAGAAGCAGTTCACACCAGAAGAAATCTCTTCCATGATCTT 92910
Query 474685 AGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743
| ||| |||| | | || || ||| | || ||||| | || | | || ||
Sbjct 92909 GGTCAAGATGAGAGAGACTGCCGAGG-CTTACCTTGGCGGAACCGTCAACAACGCCGTCG 92851
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
||||||| ||||||||||| | ||||| ||||||||||| || || ||||| || ||
Sbjct 92850 TTACTGTCCCAGCATATTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTTTAA 92791
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
| || ||||| |||||| | || || || || || || || || || || |||| || |
Sbjct 92790 TCGCTGGTCTCAATGTTCTCCGAATCATCAACGAGCCTACCGCTGCAGCCATTGCATACG 92731
Query 474864 GTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918
|||| || ||||| ||| || ||||||| | ||||||||| ||| ||
Sbjct 92730 GTCTCGACAAGAAGGTTGAGGGTGAGCGAAATGTTCTCATCTTTGATCTTGGTGG 92676
>seq454
Length=373842
Score = 91.5 bits (100), Expect = 1e-12
Identities = 169/248 (68%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
||||| ||||||| || || |||| | |||||||| |||||| | || |||| ||
Sbjct 243528 ATCCAGGTCTTTGAGGGAGAGAGAACTATGACTAAAGACAATAACCAGCTCGGAAAGTTC 243587
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| ||| ||||| || ||||| || ||||||||||||||||||| || |||| ||
Sbjct 243588 GAGCTTACCGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATTGAGGTCTCTTTCGAG 243647
Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAA 476200
|||| || || || || | || ||||| || | || || || |||| |
Sbjct 243648 CTTGACGCCAACGGAATCTTAAAGGTTACCGCCGGAGACAAGGGTACAGGAAAGACCGAG 243707
Query 476201 AATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTT 476260
||| || || || ||| || || | | ||| |||| | ||| | |||||||||
Sbjct 243708 TCTATCACCATCACCAACGATAAGGGACGTCTCACTCAAGAGGAGATTGACCGTATGGTT 243767
Query 476261 GATGAAGC 476268
|| |||||
Sbjct 243768 GAGGAAGC 243775
>seq18
Length=186891
Score = 86.0 bits (94), Expect = 4e-11
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| || | || || ||| ||||| || || || || | || ||
Sbjct 167215 ACGGAGACGGAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCCGAAAGGGT 167156
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | || ||||||||||| |||||||| || ||||||||||| || || || || ||
Sbjct 167155 GCGGCCGTCCTCAAGTTGCTTACCAGCAAAGATGAGACGTTGTTGGTCCGGTGGGATGCC 167096
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| ||||| ||||| || || ||||| | | || ||
Sbjct 167095 CTCCTTGTCTTGGATCTTCGACTTGACGTTGTCGATGGTATCGCTCGATTCGACCTCGAG 167036
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||| ||||| || ||||| | ||||| ||||
Sbjct 167035 GGTGATAGTCTTGCCGGTCAAGGTCTTGACGA 167004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268157580994592
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |