Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20fructigenus_20[genbank_20GCA_5F001414455.1_202015- 10-27] 504 sequences; 61,124,938 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq104 107 1e-18 >seq104 Length=83277 Score = 107 bits (118), Expect = 1e-18 Identities = 241/362 (67%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||| ||||| | || || || | ||| | || | Sbjct 47973 TCAACACGCTTCATGAAGAGATCTGGGATCCAGAGAGCGTAGAAGAGATCACGGGCACGA 48032 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | || || |||||||| |||||| ||||| | ||| || |||| ||||| ||||||| Sbjct 48033 ACCTCCTCCTTTCCGTGGTTCTTTCGGAGATCAAGGAACTCGAAAACATCTGCGTGCCAT 48092 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || | ||||| || ||| ||| | || ||||||||||| || ||||| Sbjct 48093 GGCTCAAGGTAGATGGCGAAAGCACCAGGACGCTTGTTACCACCTTGATCAACATATCTA 48152 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 || || | ||||||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 48153 GCGGTGTTGTTGAAAACTCGAAGCATGGGAACAATTCCGTTGGAGTTTCCGTTTGTACCC 48212 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | || |||| | || |||| ||| | |||||| |||||||| Sbjct 48213 GCAATATAAGCACCCGTCGCACGGATTCTGTGAACATTGAGACCGATACCACCAGCGTTC 48272 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 |||||||| |||||| | | ||| ||| | || || | ||||| || | ||| Sbjct 48273 TTTGAAATCATGGCACAAATTTTCAATGTGTCGTAGATACCATCAATGCTGTCCTCCTTC 48332 Query 26282 AT 26283 || Sbjct 48333 AT 48334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038445701800